XLOC_020096 (tma7)


Basic Information

Item Value
gene id XLOC_020096
gene name tma7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5663529 ~ 5668138 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040057
CTCAAACCAGCCAGTTCAAACGAACCGTCTAAACGAATCGATTCTCCAAAACAAATCGAGCCCTCCGTTCTCTCAGGCACTCGACGGAACCACTACATCCGGGTAACTGCTGGGGTCCTGACAGCGCGGAAAAAAAAGCGTTAGCTAAATAATCCGAGCAGCATGTCTGGAAGAGAAGgaGGTAAAAAGAAGCCCCTCAAGGCTCCCAAGAAGCAGTCGAAGGAGATGGACGAGGACGAAATGGCTTTCAAACAGAAACAAAAAGAGGACCAGAAAGCAATGGAGCAATTGAAAGCCAAGGCTGCTGGGAAAGGACCTTTAACTGGAGGTGGAATCAAGAAATCTGGGAAGAAGTGAATGTGGTTTAGTGTATTTTTTGCTTGCTGTTCAAACCACCAACTCAAGATTTGGGTCCACGATGGCAACAAcaaatgaatttctttttttttaagttactttatATTTCTCTTGTAAAGAAAAAGTAATAAAGTTTGTAATGACTGTACATTTCAATTTCAGAGGTTTTAATTAATGATTGTGAAACATCATGATAAAACAGCTGTAAAACATCCAAACAAGTGATCCATTATGTTGTCATTCATTCACACTTTTCATGTCCTCGATTGTGTCTTTATTTAAcctaaacaaacacagacacacacaaaaacaccatgTTAGCattgtatgtttatgttttagTCATTTTTCTGCTGTGTGTAAGTGTCATACTTTTCGTTTCTTGGATTTGTCCTTGAGCTCCACCTCTACTGGATAGTGGTCACTCACTTTCAGCGCCTGTGAAGACATTTAATCTTATAAACCACATTCTGTAAGCTAAATGTACAGTGATAACTCATGGAAATTGTGATTAAATCAACTGTGACCATAAAACCAGTCATCAGGGAGCCTTTATGAAAAATCAAAAACCTTATTTACAAAATGTGTGTATGctcagtgtgtgtatgtgcttcAATCAATGGCAATGTTCATAGTTATAAAAGCGTGGGAAAATACTTTCTGCCATGTCAAGATCTGAGCAGGGGTACATGCGTATTCTCGTGGAAATATGGCCGTTATTCCTACATCTAATAAAAGCAGAGTGTGCTAGTAATGGGGGAAACCAAGTGAAACAGCGCTATAGTGACCCCTGGTGGTCGAAACTAAATGCAACTAGAAGCCTGGCAAAACATCAACAGATTTGGTTTATAAAACGTATTGCTAGCTTTAAATTGAAAGTGTAACCTATTAAATCTTGTGTACTGTTTAGAtagacta

Function

symbol description
tma7 Predicted to be involved in cytoplasmic translation. Is expressed in several structures, including alar plate midbrain region; eye; pectoral fin bud; pectoral fin musculature; and ventricular zone. Orthologous to human TMA7 (translation machinery associated 7 homolog).

GO:

id name namespace
GO:0002181 cytoplasmic translation biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-176 Predicted to be involved in cytoplasmic translation. Is expressed in several structures, including alar plate midbrain region; eye; pectoral fin bud; pectoral fin musculature; and ventricular zone. Orthologous to human TMA7 (translation machinery associated 7 homolog).

Ensembl:

ensembl_id ENSDARG00000071670

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040057 True 1275 mRNA 0.39 4 5663529 5668138

Neighbor

gene id symbol gene type direction distance location
XLOC_020095 NA coding upstream 22846 5637885 ~ 5640683 (+)
XLOC_020094 GGH coding upstream 75553 5574952 ~ 5587976 (+)
XLOC_020093 si:ch73-256j6.2 coding upstream 94919 5532003 ~ 5568610 (+)
XLOC_020092 tppp coding upstream 184203 5478353 ~ 5479326 (+)
XLOC_020091 MYO9B coding upstream 235286 5331675 ~ 5428243 (+)
XLOC_020097 dnase1l4.2 coding downstream 14497 5682635 ~ 5700482 (+)
XLOC_020098 si:dkey-222f2.1 coding downstream 59615 5727753 ~ 5739360 (+)
XLOC_020099 cox14 coding downstream 84119 5752257 ~ 5756384 (+)
XLOC_020100 NA coding downstream 138713 5806851 ~ 5825209 (+)
XLOC_020101 BX005329.3 coding downstream 142739 5810877 ~ 5812454 (+)
XLOC_020090 mir24-4 non-coding upstream 355955 5307485 ~ 5307574 (+)
XLOC_020089 dre-mir-27e non-coding upstream 363473 5299951 ~ 5300056 (+)
XLOC_020088 NA non-coding upstream 366453 5296092 ~ 5297076 (+)
XLOC_020087 dre-mir-23a-1 non-coding upstream 370228 5293213 ~ 5293301 (+)
XLOC_020104 NA non-coding downstream 240556 5908694 ~ 5923242 (+)
XLOC_020105 NA non-coding downstream 253830 5921968 ~ 5939401 (+)
XLOC_020111 NA non-coding downstream 497666 6165804 ~ 6166752 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G163644 NA non-coding CI01000030 null 10670248 ~ 10672026 (-)