XLOC_020101 (BX005329.3)


Basic Information

Item Value
gene id XLOC_020101
gene name BX005329.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5810877 ~ 5812454 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040065
CAGGAACACATTTTGCTTCAGCAATTTTGAATTTTGTTAACATGTATTCAAACTAAAAGTACTGGGTTGATGTGGGTGTTTTATCTGGGTTTTTTTTAAGCTGCTACTGTAATCTGTTAAATgaataaagcagttatttattattattattattatttatttttacaacatttaaaatgttacaagttttttattttggtaatgtctgtttaaaatgataagaaaataactggtccactgctgaatctctttttttttctctcttagcCACCTGATGATGAGAAAGACATTTTCAATaagaagagTCCACAGTCACAATAACAAGATCATTGAGCTGTCCCCTAATTGTGGTCAGCTACATGTTTAGTCTCTTATGTGCAAAACATTATGTAGCCTAAGGAAGCAGCCCTGACTCTGTAGTTTATATAAagGAGCATGCTGAGTAACTATCCAGAACGTAGGTACAAAGCAGAAAAAAGGGCACCAAGCAGAAACATACCATCTAAACTCCTTCGATTCCTGTCAGACCAGAAAGACTTTCAGAATCCTTGGAAGATTTAAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094694

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040065 True 563 processed_transcript 0.34 3 5810877 5812454

Neighbor

gene id symbol gene type direction distance location
XLOC_020099 cox14 coding upstream 54493 5752257 ~ 5756384 (+)
XLOC_020098 si:dkey-222f2.1 coding upstream 71517 5727753 ~ 5739360 (+)
XLOC_020097 dnase1l4.2 coding upstream 110395 5682635 ~ 5700482 (+)
XLOC_020096 tma7 coding upstream 142739 5663529 ~ 5668138 (+)
XLOC_020095 NA coding upstream 170194 5637885 ~ 5640683 (+)
XLOC_020102 zmp:0000001161 coding downstream 38668 5851122 ~ 5857210 (+)
XLOC_020103 si:dkey-222f2.7 coding downstream 46013 5858467 ~ 5876077 (+)
XLOC_020104 NA coding downstream 96240 5908694 ~ 5923242 (+)
XLOC_020105 NA coding downstream 109514 5921968 ~ 5939401 (+)
XLOC_020106 BX322587.2 coding downstream 147530 5959984 ~ 5966827 (+)
XLOC_020090 mir24-4 non-coding upstream 503303 5307485 ~ 5307574 (+)
XLOC_020089 dre-mir-27e non-coding upstream 510821 5299951 ~ 5300056 (+)
XLOC_020088 NA non-coding upstream 513801 5296092 ~ 5297076 (+)
XLOC_020087 dre-mir-23a-1 non-coding upstream 517576 5293213 ~ 5293301 (+)
XLOC_020111 NA non-coding downstream 353350 6165804 ~ 6166752 (+)
XLOC_020114 NA non-coding downstream 456992 6269446 ~ 6276183 (+)
XLOC_020115 AL928685.3 non-coding downstream 477780 6290234 ~ 6290350 (+)

Expression


Co-expression Network