XLOC_020104


Basic Information

Item Value
gene id XLOC_020104
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5908694 ~ 5923242 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042028
TTCTACTTGTATAAAATGCAATAACAGTCTTATTAGTAAGGCCACACAAAAGTGATGGTAACcctttacttgaagggggtgttcataagactatcatgaaacctttataatcgtGACATGATGTGtgtcatgaatatgaatgagatttaTTCATGAGACAGCTGTcagtaatataattttaaatacatagatGACATTGTTTAAcatgtctttgttatgacaacttgacataaccaaGTGCATCACAACCTTTTGGctttgccatgaaaacatcaagaGAACAtatcttgtcataaatctgtcataaacatgattgttttGAGGTTATTATAATTGTGCCATTAATTTTATatcagggtggcatggtggctcagtggttagcactgtcacctcacagcaagaaggtcgctggtttgagtaacggctgggtcagttggcattttgcaACCTTTTCatgaaaaagggactaagctgaaggaaaattaatgaatgaatgacttttatATCATTAGCAGCTTTAGCATAGCATCAATAATAGTTTTACTGACCTCAACTAAAGTGTTACAAATTAAAATTgttgttaaaatgttattaaatgccAATTAATGATGCTGTTTTACAATTATTTGACAGATTATGGACCCTTTTACTGAGAAATATACATTCAAGTTCATTGCTCCTCTGGAAAAAGGgaatattcatgacacaattataatggcctcaagacaatcatgtttatgaaagATTTATGACAAAATTGTCCTAACGGAAGCTTGAGAGCGAGAATAACACAAAATATAGATGGAAAAGACACTAAGGCAGTCATGTAGGACAGCATAAAGACACTTTATAATACAAACAAGTGTAAAATAGTCAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042028 True 878 lncRNA 0.33 2 5908694 5923242

Neighbor

gene id symbol gene type direction distance location
XLOC_020103 si:dkey-222f2.7 coding upstream 32617 5858467 ~ 5876077 (+)
XLOC_020102 zmp:0000001161 coding upstream 51484 5851122 ~ 5857210 (+)
XLOC_020100 NA coding upstream 83485 5806851 ~ 5825209 (+)
XLOC_020101 BX005329.3 coding upstream 96240 5810877 ~ 5812454 (+)
XLOC_020099 cox14 coding upstream 152310 5752257 ~ 5756384 (+)
XLOC_020106 BX322587.2 coding downstream 36742 5959984 ~ 5966827 (+)
XLOC_020107 BX322587.1 coding downstream 48162 5971404 ~ 5977530 (+)
XLOC_020108 si:dkey-19a16.16 coding downstream 161529 6084771 ~ 6085666 (+)
XLOC_020109 zgc:171887 coding downstream 173061 6096303 ~ 6099424 (+)
XLOC_020110 si:dkey-19a16.5 coding downstream 225879 6149121 ~ 6160080 (+)
XLOC_020095 NA non-coding upstream 268011 5637885 ~ 5640683 (+)
XLOC_020090 mir24-4 non-coding upstream 601120 5307485 ~ 5307574 (+)
XLOC_020089 dre-mir-27e non-coding upstream 608638 5299951 ~ 5300056 (+)
XLOC_020111 NA non-coding downstream 242562 6165804 ~ 6166752 (+)
XLOC_020114 NA non-coding downstream 346204 6269446 ~ 6276183 (+)
XLOC_020115 AL928685.3 non-coding downstream 366992 6290234 ~ 6290350 (+)
XLOC_020120 NA non-coding downstream 571569 6494811 ~ 6499302 (+)
XLOC_020122 NA non-coding downstream 610456 6533698 ~ 6534014 (+)

Expression


Co-expression Network