XLOC_020094 (GGH)


Basic Information

Item Value
gene id XLOC_020094
gene name GGH
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5574952 ~ 5587976 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040056
ACGTAATGTCCTCGTGATGACGAATCAAAGGGGGCGGGCACAAACGTGGTTTGTCGCCGTTGATGAAGCAAACATCAGTCCACGCCTCAGTCGGTATTTCACGCTGTTTGCTTCACCTGTCGACAGCAGATCTGGGCGCAGCCTGCTATAAAAAGCCTGTCATCGCCAGTCAAGCCGACATTGTGCTGTTTTACTTGATACCATCGACGagctttgctttatttttgtcCTTTGGTGTGCTACCTGAGGTGGATGTATCGCCAGGTGCTCGTGCTCGCGGTGTTTGCCGCTTGTCTATGCGGTTTTCCAGCATCATGCGCTCGTAATTTAAATTACAGACCGATTATTGgAATTTTAGCCCAGGAGAACTTGGAGGAGGATCCTCATGCACAGGGCACTTCTTATATAGCTGCGTCATATGTCAAACACCTGGAGTCAGCTGGGGCCAGGGTTGTACCCATCCGCATAAATCGCACAGAGGAGGAGTATGAAACACTATTCAATGCAATAAATGGCTTGTTGCTTCCTGGAGGAAATGTGGACATCGAGACGTCTCAGTTTACCAGAGCGGCCAGGATTTTCTATGAACTTGCATTAAAGGCTAACGATGCTTCGGATTATTTCCCGATCTGGGGCACGTGTCAGGGCTTCCAGCAGTTCACTGTTCTGACCAGCAATAAAAACTTGTTGACTTTGACGGACACCAAAGCAGTCGCTCTGCCGTTGACCTTCAGCCCAGGAGCCCAGAACAGCAGGTTGTTCAAGAAATTTCCCAAAGATGTTCTTCAGTCTCTGGCAGAAGAAAACATCACGTCTAATTTCCACAGCTGGAGCTTGTCCACACAGAATTACAGTGCCAATCCCAAACTGAAGCGTTTCTATCGAGTCCTGACCACTAATACTGACGGCAGGAAAGAGTTCATTTCCACTATGGAGGCATATCGATATCCCTTCTACGCTGTACAGTGGCACCCTGAGAAGAGTCCATTTGAGTGGATTGAGAAATCCGGCATGGTCCACACGCTCTCCGCCATCAAAGCCACCTTCTACACAGCCCACTTCTTCGTTTCTGAAGCAATGAAAAACCGTCATCAATTTCCGTCACAGATCGAAGAAGAAAAAGCTCTGATCTACAACTATCAACCCGTCTACAATGGCCTGAACAGCATCTTCCTGCAAAACTACTACTTCGATTAAATGTCAAGTAAAGGGGGGGATTGATTCATCATGGGTTGAAAATTGATTctagttttaaaagtttttaattagtTCTCAAAGTTGCCACAACGTAATGTTTGGAATGCCTATTTTTTAATGTTCATGCCTCTAGTTCACTCATATCATTGATTGTAGATTCTAGATCATCAGTCTCGCACTTacttcctggagggccgcagctctgcactgctttgctccaaccctaatcaaacacagctgatccaactaatcaaggtgttcaagactactgttaagcaggtgtgagttaaaCTATGTagagcagcggccctccaggaattgagtgcGAGACTATTGTCCTAGCTGTAAACATGGTGTTCTAGAATCATGACTGAATGTATCTGTGCATTTATATCAGTCCAGACGTTGTTAATATTCCAGTGCCATCTTTTAAGATATAAAACTTGATCTGTAATCTCTCACAGGGTTAAATAGCATGACCAAtgcaatgttaaaatgttttatttcactgtaaatctgaaggaaaattaaaaatatagatttaaatgTGTCTCAATTCTATCTTTGCCCAGTAGGGGGCAGCAGTGACCATCTAACCTTATATTGAAGAACCAAACGAGACttctcaaaacatttatttttttgcctttcgTTTTTTAAGAGGTGGGACAACATAAAATTACCAGAAAACGACGAGATCTAAATCTCCTTACAATCAGATACATAAAGCAGTCTGAGGTACAAAATCAAAATGGGGAAAGGGGGGAAAAGTGCAAATATGCTAATAGCTCTGGTACCATGACAGGAAGATACAAAACTGAAGCGTTCTACACACTGGCGCCAACACAAAGATCTCCTACGCCAAGGCTTATTAAAGAAACATAGTATGCAAGTATGTTATATAGAGAGTTCTGGAGCACTAATAACCATTTAACATGAACTGTTCACGTTTGCTAAATTGTGTACAATCATTTGACCCCTGACCTGTGCATAGACTCTTGTACTACAGTGTTTCATGCACTTTAAAGGAGTAAAGAAAAGCCTTCTATTGcgacaaataatatttgacaaatagATTGTATCATAAACAAGATAATCTTTAGCTAAGTTGACACtttctttt

Function

symbol description
ggh Enables gamma-glutamyl-peptidase activity. Acts upstream of or within folic acid-containing compound metabolic process. Predicted to be located in extracellular space. Predicted to be active in vacuole. Orthologous to human GGH (gamma-glutamyl hydrolase).

GO:

id name namespace
GO:0046900 tetrahydrofolylpolyglutamate metabolic process biological_process
GO:0006760 folic acid-containing compound metabolic process biological_process
GO:0005773 vacuole cellular_component
GO:0034722 gamma-glutamyl-peptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
ko00790 Folate biosynthesis
ko01523 Antifolate resistance
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040426-2615 Enables gamma-glutamyl-peptidase activity. Acts upstream of or within folic acid-containing compound metabolic process. Predicted to be located in extracellular space. Predicted to be active in vacuole. Orthologous to human GGH (gamma-glutamyl hydrolase).

Ensembl:

ensembl_id ENSDARG00000105118

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040056 True 2320 mRNA 0.43 9 5574952 5587976

Neighbor

gene id symbol gene type direction distance location
XLOC_020093 si:ch73-256j6.2 coding upstream 6342 5532003 ~ 5568610 (+)
XLOC_020092 tppp coding upstream 95626 5478353 ~ 5479326 (+)
XLOC_020091 MYO9B coding upstream 146709 5331675 ~ 5428243 (+)
XLOC_020090 mir24-4 coding upstream 267378 5307485 ~ 5307574 (+)
XLOC_020089 dre-mir-27e coding upstream 274896 5299951 ~ 5300056 (+)
XLOC_020095 NA coding downstream 49909 5637885 ~ 5640683 (+)
XLOC_020096 tma7 coding downstream 75553 5663529 ~ 5668138 (+)
XLOC_020097 dnase1l4.2 coding downstream 94659 5682635 ~ 5700482 (+)
XLOC_020098 si:dkey-222f2.1 coding downstream 139777 5727753 ~ 5739360 (+)
XLOC_020099 cox14 coding downstream 164281 5752257 ~ 5756384 (+)
XLOC_020088 NA non-coding upstream 277876 5296092 ~ 5297076 (+)
XLOC_020087 dre-mir-23a-1 non-coding upstream 281651 5293213 ~ 5293301 (+)
XLOC_020083 NA non-coding upstream 452395 5118313 ~ 5122557 (+)
XLOC_020100 NA non-coding downstream 218875 5806851 ~ 5825209 (+)
XLOC_020101 BX005329.3 non-coding downstream 222901 5810877 ~ 5812454 (+)
XLOC_020104 NA non-coding downstream 320718 5908694 ~ 5923242 (+)
XLOC_020105 NA non-coding downstream 333992 5921968 ~ 5939401 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G162306 NA non-coding CI01000030 null 10704921 ~ 10712174 (+)
mexican tetra (Astyanax mexicanus) G136271 NA non-coding NC_035911.1 CM008314.1 30529454 ~ 30529802 (+)