G162306


Basic Information

Item Value
gene id G162306
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10704921 ~ 10712174 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184334
AGTTTAAATCCATTTTATTTTACTTAAAATGTATAAAGCAATAGGACATTTTAACATCGCATTGATCATGCTTGTGAGCTCTGTGAACGATGACAGAGTTTAACTTCTAAACGATGGCACGAGAAGATTCTTCTGAATTGGATATAACTGCTTTAATACATTCAGTCATGATGATTCTAGAACACTTCACATCACATCCAGAATCTACAATCAAGAGCTACATTAGAAGCATGAACATTAAAATACATCCCAGCATTCCAAACATAAAATTTTGGCAAAGTGTGAGGAAAGAAATAAAAACATTAAAAACAAAATTAAAAAATAATTTTCTTGCCATGGTGAATACCAAGAGCAATGACTTGAACACTTAATCGAAGTAGTAATTTTGTAAGAAGATGCTGTCCAGGCCTTTGAAGACGGGCTGATAGTTGTAAATCAGAGCCTTTTCCTCCTCACTTTGCGAAGAAAAACGATGATGGTTTTTCATTGCTTCAGAAACAAAGAAGTGGGCAGTGTAGAAACTGGCTTTGATAGCTGAGGGGGTGTGCACCATACCAGCTTTCTCAATCCACTCAAACGGGCTTTTCTCTGGGTGCCATTGCACAGCGTAGAAGGGATATCGAGACGCCTCCATGGTGGAAATGAACTCTTTCCTGCCGTCTGTGTTTGTGGTCAGGACTCGATAAAAACGCTTCAGCTTGGCATTGCCACTGTAATTCTGCATGGACAAGCTCCAGCTGTGGAAATTAGACGTGATGTTTTCTTCTGCCAGAGACTGAAGAACATCCTTTGGAAATTTTTTGAACAACCTGCTGTTTTGGGCTCCTGGGCTGAAGGTCAACGGTAGGGTGACTGCTTTGGTGTCGGTCAAGGTCAACAAGTTCTTGTTGCTGGTCAGAACCGTGAGCTGCTGCAAGCCCTGGCAGGTGCCCCAGATCGGAAAATAATCCGAAGCATCATTAGCCTTTATTGCAAGTTCATAGAAAATCTTCGCCACTCTGGTAAACTGAGACTTTTCAATGTCCACATTCCCTCCAGGTAGCAACAAACCATTTATTGCGTTGAATAGTTTTTCATACTCCTCCTCTGTGCGATTTATGCGGATTGGTACAACCCTGGCACCAGCTGACTCCAAGTGTTTCACATATGATGCAGCTATATAAGAAGATCCCTGTGCATGAGGGTCGTCCTCTAGGTTTTCCTGGGCTAAAATTCCGATGATTGGTCTGTAATTTAAATTACGAGCGCATGATGCTGGAAACCCGCATAGAATAGCGGCGAACACCGCGAGCACGAGCACCTGGCGATACATCCACCTCAGGTAGCACACCAAAGGACGAAATAAATTAAAGCTCCTTGATGTTATCAATAAAGAAGACAATGTCAGCTCCACTGGCGGTGATGGTGATGATATCGGGCTTTTTAACGAAAGCTGCACCCGGATCTGCTAATCCTGCAGTCGTCAGGTTAAACAAACAGCGTCTCGACACGCGCGTGAATTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU184334 True 1503 lncRNA 0.43 9 10704921 10712174

Neighbor

gene id symbol gene type direction distance location
CI01000030_10689813_10702377 NA coding upstream 1928 10689448 ~ 10702993 (+)
CI01000030_10664189_10683103 MCM2, MCM2.L coding upstream 21540 10663384 ~ 10683381 (+)
CI01000030_10646148_10649874 NA coding upstream 54984 10645873 ~ 10649937 (+)
CI01000030_10642268_10643835 NA coding upstream 60607 10642268 ~ 10644314 (+)
CI01000030_10628602_10631875 BCDIN3D coding upstream 72809 10628602 ~ 10632112 (+)
CI01000030_10716988_10729316 NA coding downstream 4255 10716429 ~ 10729662 (+)
CI01000030_10738658_10751094 NA coding downstream 25913 10738087 ~ 10751548 (+)
CI01000030_10753303_10762765 NA coding downstream 41129 10753303 ~ 10762765 (+)
CI01000030_10766284_10769462 NA coding downstream 54110 10766284 ~ 10769484 (+)
CI01000030_10775818_10796010 NA coding downstream 61427 10773601 ~ 10796653 (+)
G162356 NA non-coding upstream 35084 10668821 ~ 10669837 (+)
G162379 NA non-coding upstream 36245 10668399 ~ 10668676 (+)
G162365 NA non-coding upstream 54050 10650424 ~ 10650871 (+)
G162722 NA non-coding upstream 62888 10641805 ~ 10642033 (+)
CI01000030_10537146_10539791 NA non-coding upstream 81113 10536191 ~ 10540258 (+)
G162793 NA non-coding downstream 76593 10788767 ~ 10789149 (+)
G162794 NA non-coding downstream 81636 10793810 ~ 10794162 (+)
G162795 NA non-coding downstream 82069 10794243 ~ 10794464 (+)
G162813 NA non-coding downstream 138470 10850644 ~ 10850977 (+)
G162817 NA non-coding downstream 142309 10854483 ~ 10854985 (+)
CI01000030_10473378_10509560 NA other upstream 203278 10471835 ~ 10511071 (+)
G162297 NA other upstream 483697 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 659038 10039358 ~ 10047210 (+)
G162449 NA other upstream 1347907 9356403 ~ 9357014 (+)
G162137 NA other upstream 2133195 8568010 ~ 8571726 (+)
G162821 NA other downstream 153838 10866012 ~ 10868440 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 628581 11362114 ~ 11380772 (+)
G162951 NA other downstream 780427 11492601 ~ 11496119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020094 GGH coding NC_007133.7 CM002906.2 5574952 ~ 5587976 (+)