CI01000030_10766284_10769462


Basic Information

Item Value
gene id CI01000030_10766284_10769462
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10766284 ~ 10769484 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_10766284_10769462.mRNA
GTGTGTTTGGTGTTACAGGTGAAATACAGTCAGTGATAGAGGGAGATTCTGTCACTTTATACAGTGATGTTACTGAAATACAGAAAGCTGATCTGATACTGTGGACATTTGGACCTGACAGCACTCGTATAGCTCAAATCAATAGACTGGTCAATAAGGTCTCGTTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTACATCTGGACAAGACTGGATCTCTGACCATCACAAACACCAGAACTGAACACAGCGGCGTTTATGAACTACAGACCTTTGGTGGAACTGAGGCACCACCGAAGAAATTCAGTATTATTGTTTCTGCTCCTCTGCCCGTTCCTGACATTATCAGAGACTGTTCGTTATCAGAAAGATCATCAAAGCAGAATTGTTCATTGGTGTGTTCAGCTGTGAATGTGGGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGACATCACTCACCTCTGTCACACATGTTCAGCACCAGGTTTTTCTGCAGGTGTAATAGCGCTGGTTTGTGTTTGTGCTCTGGCTGTGGCTGCAGGATTGTGTGGTTTTTACTATTACCATCAGCACAAGATGTCGAAACAAGCAGATCAAGTGGATCAACCTGATGAAGAACATATTCAGCTGACCAATGGTGTGTTCATTGAGAAAGATGAAATTAAGTCATTGTTCGTGATTGAGGGAGAATCTCTCACGCTATACACTGATGTCACCGAAATACAGGAGAATGAGCTGATACGCTGGAAGTTTGCTGATTCAGAAAAACGCCATTGTGCTGAATTTGTTGTCATAGCTAAGTGGTATAAAACAAACAATGAGGAATACTTATATAATGAAGAAATATTCAAAGACTGTTTGAAACTGGACCACAAAACTGGATCTCTCACCATCACAAAAATCACACCTAAACATTATGGACATTATAAACTACACATCACCAGCGAGGGACAGAATATCTCAAAGACGTTCAGTGTTGTTTCCTATGTTCCAATGACAAGACAAGGGACACTCCAGAGGAGTCAAACCCGCCCTTGATAACAGAAGAGGAGCATACAGT

Function

NR:

description
Zgc:171601 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_10766284_10769462.mRNA True 1203 mRNA 0.42 6 10766284 10769484

Neighbor

gene id symbol gene type direction distance location
CI01000030_10753303_10762765 NA coding upstream 3519 10753303 ~ 10762765 (+)
CI01000030_10738658_10751094 NA coding upstream 14736 10738087 ~ 10751548 (+)
CI01000030_10716988_10729316 NA coding upstream 36622 10716429 ~ 10729662 (+)
CI01000030_10689813_10702377 NA coding upstream 63291 10689448 ~ 10702993 (+)
CI01000030_10664189_10683103 MCM2, MCM2.L coding upstream 82903 10663384 ~ 10683381 (+)
CI01000030_10775818_10796010 NA coding downstream 4117 10773601 ~ 10796653 (+)
CI01000030_10860938_10862107 S1PR4 coding downstream 91284 10860768 ~ 10862292 (+)
CI01000030_10911224_10918511 NA coding downstream 138882 10908366 ~ 10918929 (+)
CI01000030_10936461_10939911 NA coding downstream 166977 10936461 ~ 10940790 (+)
CI01000030_10958494_10960930 TNFAIP8L1 coding downstream 187673 10957157 ~ 10962204 (+)
G162306 NA non-coding upstream 54110 10704921 ~ 10712174 (+)
G162356 NA non-coding upstream 96447 10668821 ~ 10669837 (+)
G162379 NA non-coding upstream 97608 10668399 ~ 10668676 (+)
G162365 NA non-coding upstream 115413 10650424 ~ 10650871 (+)
G162722 NA non-coding upstream 124251 10641805 ~ 10642033 (+)
G162793 NA non-coding downstream 19283 10788767 ~ 10789149 (+)
G162794 NA non-coding downstream 24326 10793810 ~ 10794162 (+)
G162795 NA non-coding downstream 24759 10794243 ~ 10794464 (+)
G162813 NA non-coding downstream 81160 10850644 ~ 10850977 (+)
G162817 NA non-coding downstream 84999 10854483 ~ 10854985 (+)
CI01000030_10473378_10509560 NA other upstream 264641 10471835 ~ 10511071 (+)
G162297 NA other upstream 545060 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 720401 10039358 ~ 10047210 (+)
G162449 NA other upstream 1409270 9356403 ~ 9357014 (+)
G162821 NA other downstream 96528 10866012 ~ 10868440 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 571271 11362114 ~ 11380772 (+)
G162951 NA other downstream 723117 11492601 ~ 11496119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020786 CABZ01064968.1 coding NC_007133.7 CM002906.2 5518314 ~ 5529241 (-)