CI01000030_11362386_11380216 (CALR3A, CALR3, CALR3B)


Basic Information

Item Value
gene id CI01000030_11362386_11380216
gene name CALR3A, CALR3, CALR3B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 11362114 ~ 11380772 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_11362386_11380216.mRNA
ATATAAATATGAAGCTCAGATACTTATAGTTTTAGTGTGACATTAAACAGTCAAAGTGTCTTTTTTAGTAAATGTTCCATATATAAATCTATTTCTCTTTTCATTCATCATATTTTGTCTTTGTACTATTATTATGTGTATTATTAATTTCACATTTAAATGATTAAATGTATTTTAGTGAAGCTTCATCAAACCAACATCAAGCAACTTTAATCTGTGAAAAACTCTGTTCTTCAGGAGTGTTTGGTGATTATGTTGATTTGAAGTCAGTGATGGAGGGAGATTCAGTCACTCTAAACTCTGTTACTGAAATGAAGGATGGTGATGTGATTCAGTGGATGTATGGATATGAAAAGACTTTAATAGCTGAAATCAGTAAACGGCCCAACAGATTCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAACTGGACAATCAAACTGGATCTCTGACCATCACAAACACCACAATGAAACATGCTGGAAGTTATGAACGACAGATCAACAGTAGGAAACAGTATTTTAGTCTCGAAGTCATTGTTAAAATATTAGTGAAGGAGGGAGATTCAGTCACTCTAAACACTGATCTTACTGAAATGAAGGATGATGATGTGATTCAGTGGAGGTTTGAAAACACTGTAATTGCTGAAATCAATAAACGGAACAACAGCTTCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAACTGGACGATCAAACTGGATCTCTGACCATCACAAACACCAGAACTGAACATGCTGGAGATTATGAACTGAAGATCAACTATAAGAGCGTTTATTTCTATCTCAGTGTCATTGTGGCAGTGGCAGAGGGAAATTCAGTCGCTCTAAAGTCTCTTCTTACTGAAATGGGGAATGGTCATGAGATTCAGTGGAGGTTTGGAAATGAAGAAACTTTAATAGCTGAAATCAATAATTGGGTCGACAGCTTCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAATCAAACTGGATCTCTGACCATCACAAACACCACAACTGAACATACTGGATGTTATAAACTACTGATCAGTTTTTTTAGCAGACCTTACAGGAGGCCTTATTTTTTTTGTTTTACTGTCTACGCTCGTCTGCCTGTTCCTGTCATCAGCAGTAACTCTTCACAATGTTCTTCATCATCATCATCATGTTCATTGGTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGACATCACTCACCTCTGTCACACATGTTCAGACTCTGTCCACTGTTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGTCATTCTTCTGGTTTATGGCATCAGATCCAGAAGAGCTGAACGAGATCAAGCACAGATTCACACATCAGATGGTTGGAAAAGCAGATGGGTCGAATCCAAACACAAATCCGACTATGGCCAGTGGAAACTGACCTCAGGGAAATTCTACGGCGATGCTGAGCTTGATAAAGGTTTGCAGACAAGTCAAGATGCCAGGTTTTACGCTCTATCCAGTCGCTTTGACTCGTTTAGTAATGAGGGTAAACCAGTAGTGATCCAGTTCACTGTGAAACATGAGCAGAAGATCGACTGCGGCGGTGGGTACGTGAAAATCTTCCCCGCCGACCTGGACCAGACCGATATGCACGGCGATTCGCAGTACTACATCATGTTCGGACCCGACATCTGTGGCTACAGCACCAAGAAAGTTCATGTCATCTTCAACTACAAAGGCCAGAACCACCTAATCAAGAAGGACATCAAATGCAAAGACGATGAACTTACACACCTCTACACGCTGATCCTGCGGCCAGACCAGACGTACGAAGTGAAAATCGACAACGAGAAGGTGGAGTCGGGCTCCCTGGAGGAAGACTGGGACTTCCTTCCTCCCAAAAAGATCAAGGATCCAGAGGCCAAGAAGCCCGAGGATTGGGACGACCGGGCGAAAATCGACGATCCTGAAGACACCAAACCTGAGGCACTTGTTCTTAGACATGAATCCAATGGTGCATTAAAACTTTATATCCCTGCGGTTCAGGACTGGGACAAACCTGAGAACATTCCCGACCCTGATGCCAAGAAACCAGACGATTGGGATGAAGACATGGACGGAGAATGGGAACCTGCGATGATCCCCAACCCAGAGTACAAGGGCGAATGGAAACCAAAACAGATCGACAACCCCAACTACAAAGGCACCTGGATTCACCCTGAAATCGACAACCCAGAGTACACAGCAGATGACGCCATTTACAAATTCGACAACATTGGCATTCTGGGACTGGATCTTTGGCAGGTGAAATCTGGAACGATCTTTGATAACTTTCTGATCACCGATGATGTTGAGGAGGCTGAGAAATTTGGTACAGAAACATGGGGCGCAACGAAGGACACTTCTGAGGCTGTATTTCGCGGGGTCTCGCGCTTTAACACAATGCTGACGATCACTCTGAAGACGCTCCAGCAGCAGACGTTTAAAGTGCAGATAGATGAGGAACTGACGGTAAAGGCTCTTAAAGAGAAGATAGAGGAAGAAAAGGGTCAAGATGCTTTTCCAGCTGTCGGTCAAAAACTAATCTATGCAGGCAAAATTTTGAATGACGATATACCTCTAAAAGAATACAAAATAGATGAGAAGAACTTTGTCGTGGTGATGGTTACAAAGCCCAAATCTGCAACACCACCACAAGCTCCTGCTCCCGTTAGCGCGTCCCTCGCCGAAACCCCCGTCCATCAGCCCACGGCTCCTGCTGCGCCTCCTACTGCCTCCACAGTGCCTGTATCAACCCCTGCTCCCGCTCCTGTAGAACCAGCGGCGTCAGCGGAGCCGGCCACGCTGCCTGTTACAGTGCCCCCTGCTGCCTCGGAGGCTGCTGCGGAAACGCCAGAGCCAGTTAGCGCCACTCCTGCTCCGATCTCAGAAGAGGAGAACCAGGCCGCCCAAGAAGAGCAGGCCATCGCCCAATCAGAGGCCAGCATTATAGATGAGTTGGGTCTTTTAGAAGCGGCTGCATCCATACTAGTTACGGGTCAAGCATATGAGAATTTGGTGACGGAAATCATGTCAATGGGTTACGAGAGGGAGCAGGTGATCGCCGCCTTACGAGCAAGTTACAACAATCCGGACAGAGCCGTAGAGTACCTGCTTATGGGTATTCCCACAGAATCCGAGCAGCCGCCACAGGAAGTAGTTCGGCCCACTGCCGTGCCCAACCCCACCCCTCCCGCACCACAGCGACCTCAGCCTCCGCCCACCGCCACAGCCGGTGCGGAGTCCGGAGCCGCGCAGCCGACGGCAAACCCGCTTGAGTTCCTGAGGAACCAGCCACAGTTCCAGCAGATGCGGCAGATCATCCAACAGAACCCGGCGCTCCTGCCGGCACTGCTGCAGCAGCTGGGCCGAGACAACCCGCAACTCCTGCAGCAAATCACGCAGCATCAGGAGCGGTTTGTGCAGATGTTGAACGAGCCGCAGCCAGGCGAGGCCGGAGCCGCCGAAGCCCCCGCCGCCCCACAGACGAACTACATTCAGGTCACGCCGCAGGAGAAGGAAGCCATCGAGAGGTTAAAAGCCCTAGGGTTTCCCGAGGGACTCGTCATCCAAGCCTACTTCGCCTGCGAGAAGAACGAGAACCTCGCCGCAAACTTCCTGCTCCAGCAGAACTTTGACGATGAGTGAACGTTACCGGCGACACTTGGAGGACGACGACGGAGAGAATGCAAGCGTGCGTGTGAATGTGTGCGAATAGGAAGTCGACTGGTCTTCCATGATGGTTGTCATGGAGTCTAAACCGAAGCCATGATGTGACGTTAAATATCAGCACAGCGTTTTATTTTGATAGATATAGCCGATCCTCCACGTTGAGGTGTCCGTTGTCTGTCTGGTTTCTGCTGCTATCACTGCTGTGTGCGTCGAGTGAGTTAAAACCCTGCCAAAAACTCTCAAGCTATCAGAATCATGTTTTTCAAATGCAGTATTAATAATGAGGCGATTTTGTTAGGGTAGATGCCAAATTTAGTTTGTCATTGAGGGATAGATGAACATTTATTCAACCCAATTTTTTTTGAGTTTCTCCACTGGAAGACGTATTTTCGAGTCTGTCAAATTAAATATGGCGTCTACTCTAACTTATGGCACTTTATATCATTTTTAATGTTTAATTTTCCTGCGTTTGTGCAATGGATGCCACCAAACTACTTTGCAATTCATCTGTTCTCCTACATTACTATTAGAA

Function

symbol description
calr3a Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; periderm; and polster. Orthologous to human CALR3 (calreticulin 3).
calr3b Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axis; digestive system; ectoderm; and hatching gland. Orthologous to human CALR3 (calreticulin 3).
calr3 Predicted to enable several functions, including calcium ion binding activity; protein folding chaperone; and unfolded protein binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Located in endoplasmic reticulum lumen and nuclear envelope.

GO:

id name namespace
GO:0006457 protein folding biological_process

KEGG:

id description
K08057 CALR; calreticulin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_11362386_11380216.mRNA False 4461 mRNA 0.47 22 11362114 11380772

Neighbor

gene id symbol gene type direction distance location
CI01000030_11333340_11346098 NA coding upstream 15907 11333253 ~ 11346207 (+)
CI01000030_11316738_11317918 NA coding upstream 44155 11316495 ~ 11317959 (+)
CI01000030_11289568_11298414 NA coding upstream 63637 11287870 ~ 11298477 (+)
CI01000030_11278476_11281567 NA coding upstream 80371 11278396 ~ 11281743 (+)
CI01000030_11211094_11214554 NA coding upstream 147416 11209308 ~ 11214698 (+)
CI01000030_11382916_11385905 NA coding downstream 1599 11382371 ~ 11386339 (+)
CI01000030_11437923_11444045 NA coding downstream 56855 11437627 ~ 11444049 (+)
CI01000030_11464522_11490298 FBN2B coding downstream 83750 11464522 ~ 11490628 (+)
CI01000030_11550703_11555403 UHRF1 coding downstream 169931 11550703 ~ 11555596 (+)
CI01000030_11563241_11581907 KDM4B coding downstream 182469 11563241 ~ 11581907 (+)
G162761 NA non-coding upstream 11989 11315602 ~ 11350125 (+)
G162912 NA non-coding upstream 70019 11260148 ~ 11292095 (+)
G162763 NA non-coding upstream 94292 11265536 ~ 11267822 (+)
G162895 NA non-coding upstream 108385 11246668 ~ 11253729 (+)
G162891 NA non-coding upstream 110018 11225660 ~ 11252096 (+)
G162954 NA non-coding downstream 10548 11391320 ~ 11391618 (+)
G162955 NA non-coding downstream 10867 11391639 ~ 11395583 (+)
G162964 NA non-coding downstream 30610 11411382 ~ 11423557 (+)
G162974 NA non-coding downstream 53023 11433795 ~ 11434026 (+)
G162975 NA non-coding downstream 53276 11434048 ~ 11434264 (+)
G162821 NA other upstream 493674 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 621563 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 860471 10471835 ~ 10511071 (+)
G162297 NA other upstream 1140890 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 1316231 10039358 ~ 10047210 (+)
G162951 NA other downstream 111829 11492601 ~ 11496119 (+)
CI01000030_11184734_11195838 NA coding upstream 144890 11182706 ~ 11195865 (+)
G162893 NA non-coding upstream 103836 11234723 ~ 11236919 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding CM030142.1 CM030142.1 14173845 ~ 14179120 (-)