CI01000030_11550703_11555403 (UHRF1)


Basic Information

Item Value
gene id CI01000030_11550703_11555403
gene name UHRF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 11550703 ~ 11555596 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_11550703_11555403.mRNA
GTATTGTCCGGAATGCCGTAATGATGCCAGCGAGGTGGTTCTGGCTGGAGAGAAGCTGAAGGAAAGCAAGAAAAAGGCCAAGATGGCGTCTGCAAGCTCTTCCAGTCAGAGGGACTGGGGGAAGGGTATGGCGTGTGTCGGCCGCACCAAACAGTGCACCATCGTTCCCTCCAACCATTACGGGCCCGTTCCTGGAGTTCCAGTGGGAACGCTGTGGAAGTTCAGAGTGCAGGTGAGTGAATCGGGTGTCCACAGGCCTCATGTCGCAGGGATTCACGGCAGAAGTAACGACGGTGCTTATTCTCTGGTGCTCGCCGGAGGCTACGAAGATGATGTGGACGATGGTAATGAGTTCACCTACACTGGCTCCGGGGGTCGCGACCTGTCTGGGAACAAGAGAACGGCCGAGCAGTCCTGCGATCAGAAGCTCACCAACATGAACAGGGCACTTGCTCTGAACTGTAACGCGGCGGTGAATGAGAAGGAAGGCGCGGAGGCCAAAGACTGGAAGGCCGGGAAACCTGTGAGAGTCGTGCGCAGCTCCAAAGGACGCAAACACAGCAAATACTGTCCTGAAGACGGCAACCGATACGACGGCATTTACAAGTATCCTGAGGGTTATCTGGAAGCCGTGGCTGCGAAAGAAAAGGAGAAAGAGAACAAAAATGAAGAAGACGTTGAAGAAACGCCCACAAAGGGCAAGAGGAAGAGGAAATCCCAGACCGTGGACGAGAAGAGTTCTCCGGCCAAAGGCACGCCTAAGAAGATGAAAGTGGAGGCGTACAAACTGAGCAAAGAACAGAAGAACTTGATCAAAGACGATGAGCTGAACAAGAAGCTGTGGGACGAAGCCATGGAGTCTCTCAGCCTCGGACCTCGCTTCCTGAACAAAGTGGAGGAAGTTTTCCTGTGCATCTGCTGCCAAGAAGTCGTCTATCAGCCCATCACCACAGAATGCCAACACAACGTCTGCAGGGAGTGCCTTCAGCGATCTTTCAAAGCCGAGGTCTACACCTGTCCGGCTTGCCGACATGATCTGGGCAAAAACTACCAAATGACGGTGAACAAACCTCTCCAAGCCATCCTCACCCAGCTCTTCCCAGGATACAGCAGCGGCCGGTGTTGACGCGGCGCGACAATTCCACTAACGAAATGGATTTCGTTTTTTATTATATTTAACAAATGCATCAGGTTGTAGGATTGATCGAAACACCTCCGCCTACTTGATTTGGCCCTGTTTTGTGACCTGCCTCTATCTAGCCACTCAACTTCTGTCCGTTGTAGTAATTTCTTCTGAATCGCAAGCTTCATATTTACGA

Function

symbol description
uhrf1 Predicted to enable several functions, including hemi-methylated DNA-binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; hypermethylation of CpG island; and intestinal epithelial structure maintenance. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; liver; pleuroperitoneal region; and presumptive neural retina. Orthologous to human UHRF1 (ubiquitin like with PHD and ring finger domains 1).

NR:

description
NP95

GO:

id name namespace
GO:0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity molecular_function

KEGG:

id description
K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_11550703_11555403.mRNA True 1319 mRNA 0.52 9 11550703 11555596

Neighbor

gene id symbol gene type direction distance location
CI01000030_11464522_11490298 FBN2B coding upstream 60075 11464522 ~ 11490628 (+)
CI01000030_11437923_11444045 NA coding upstream 106654 11437627 ~ 11444049 (+)
CI01000030_11382916_11385905 NA coding upstream 164364 11382371 ~ 11386339 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B coding upstream 169931 11362114 ~ 11380772 (+)
CI01000030_11333340_11346098 NA coding upstream 204496 11333253 ~ 11346207 (+)
CI01000030_11563241_11581907 KDM4B coding downstream 7645 11563241 ~ 11581907 (+)
G162975 NA non-coding upstream 116439 11434048 ~ 11434264 (+)
G162974 NA non-coding upstream 116677 11433795 ~ 11434026 (+)
G162964 NA non-coding upstream 127146 11411382 ~ 11423557 (+)
G162955 NA non-coding upstream 155120 11391639 ~ 11395583 (+)
G162954 NA non-coding upstream 159085 11391320 ~ 11391618 (+)
G162951 NA other upstream 54584 11492601 ~ 11496119 (+)
G162821 NA other upstream 682263 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 810152 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 1049060 10471835 ~ 10511071 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020754 uhrf1 coding NC_007133.7 CM002906.2 4408643 ~ 4439311 (-)