G162912


Basic Information

Item Value
gene id G162912
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 11260148 ~ 11292095 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU185040
CCTTCAACTACCCCAGTAAAGGTCAGAATCTTTGCTCGTGAGGTTATAATAATTGGGTCACTTAGAATATGATTACCCTCACATTCGGAGCAGAATGTTTCTTCAGGAATTAGTTGGTGTCTAAATTCACTTCCATGTTGTAGACCACTAACCAAATTTTGAGGAAGGTCCACAGGCAGAGATTTATTTTTCATCAAATAGCGCACCATCCTCTCTATTCCATCATCATTAGGTGGGTACTGATGATCACTACAGTCATCCACACTCTCAGACTGCTGTTGAGGTATCTGCATGGGATCAATCCTTTCGGTGGTCTTCACCTTCTGGAAGAGAGCTCTCTGACTTTAAAATAAATGCCATTTAGCTATTGCTTTGTGAATACATGACTGTTTTGTTTTATTACATGGACAGGCCCATGTGATCTTCTTACTGTCATATACAACAGTCACTCTTCCAAGTCTGCAGTAATAAGACATTTTTGGCTCATACACTGATATAGCAAATATGATCGCTACAGAAAGTGGCACATCATCTTTGTTTGCCATGCATTGCCTTTCGATGCATGCATCTTTCCTACTTTCTCCAAACCATTTTTCTTTCACCATCTCGTTTAGGGTTTCCTCTTTGAGATTAACAGAATTGCCATCATCTTTGGGACAGAAAGCTAAGGACATGAGATGGCAGCACTCAAATGGTTTCAGGCCACTCCTTTGTGCAAAATCAGCACTAGCATTACATTGGTCTAGTTCACACATAACTTTGTCATTCACACCCCAAATCCTTTTTTGAACATGGATGGGAATTGATGGTGCACTGAAAGATTTTGCCACTGCAAAAATTCCATGCTTACTGTCAATGACCTGACAAAGTAAATGTCGTTCTAATGTGATGGCCTCTTTAACTGTGGTGTGCTTTCTTCTAATGTGAACTCGCAAGTACTTTTTATTCAATTCCATATCACAATGATCACATCTGATTCTGTTCTTCTTTGGTTGAGGACGCTTTACTGTTGGTTGGTCTGGTGGAACAAGGACAGAGGAAATAGCCGGAGATGGAAATACTTGGGTGGATGCAGAAAGAGGAAATGGAGCTTCAGAAAGAGGGCACGTTGTCACAGGTTGCAAAAGTTGACATAAGGGACTTGTCCAAGACTGTGTCATTGCTGGAGACTGAAACACTGATGTAACTGGAGATGAAGATGTTCGGATAGCCATGGGGCAAGACAGGGGAGGCGCCTGTGTAATGACATGAGAAGTCTGTGCCGATATAGCAGAAAGTGGAGCAGTGGCTGCTGGGCTATGCAGGAGTGGAGATTGAGCTTCCTGGCCAGGAATAGCCAACTTTTGTTTACATTTTTGAAGATGAGTAATTAACTGCAGGTTTCTTATCACTGTAGCAGGACAGTAACAGCAGTGAAAATGTGCATTTTCTCTACAGTGTAAATTGCACTTAATCACAAAATCTGGGGGGGAAAAGTTACACACATGTGACATGCATTACTCTGATCAAATTTTAAGGCAAAATAATATTAGTAGAGGTGAAATTATACTCACCATCATGGTGTACTGCCAATTTTAGATGATTCTCTACATGGTTATCAATGGATAGTTGTGGTGTGGTTTTGTACGTCTCACAAAAAGGGCAGTGGTACTGGTTACAGCACTTTGTGCACCTTGAAATTACTGGGCAACTGCCCTTTTTAAAGACATTCATCTAGAACAATGTAATAGCAAATAAGTATTCATTAGCCGAGCAAAATCAGGTTAATTTTACATTAGCCCTGCAGTCTGTCCATAGTATTATGTACTTAAGTATAAGATTAAAATGAGAATCGCTGTGAGCATTATACAAGTCATGTCAGCTAAACACGTTTACACCGCTTCGGAAACATAACACTACACAAGACTATACATGTTGAAACAACAAAACATTAAATAAAGATTCCAAAGATTAATTACCTACCGACAAAACAATCACTGTTAATTAATCCACCGTTTTTCTGCAGACTCTTCTTGGAAGACCAAAGCACGTGCGATCGTTTACCACCTCTCTACTGCGCATGCGTCTATGACGTCAACAAAACACACCATCGCGCATGCGCGTAACAACATCCAGTACTTGTTGAATCAGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185040 True 2133 lncRNA 0.40 2 11260148 11292095

Neighbor

gene id symbol gene type direction distance location
CI01000030_11211094_11214554 NA coding upstream 45450 11209308 ~ 11214698 (+)
CI01000030_11184734_11195838 NA coding upstream 64283 11182706 ~ 11195865 (+)
CI01000030_11168935_11171909 NA coding upstream 87843 11168410 ~ 11172305 (+)
CI01000030_11114957_11124683 NA coding upstream 135044 11114868 ~ 11125104 (+)
CI01000030_11101642_11111505 NA coding upstream 147126 11100683 ~ 11113022 (+)
CI01000030_11316738_11317918 NA coding downstream 24400 11316495 ~ 11317959 (+)
CI01000030_11333340_11346098 NA coding downstream 41158 11333253 ~ 11346207 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B coding downstream 70019 11362114 ~ 11380772 (+)
CI01000030_11382916_11385905 NA coding downstream 90276 11382371 ~ 11386339 (+)
CI01000030_11437923_11444045 NA coding downstream 145532 11437627 ~ 11444049 (+)
G162895 NA non-coding upstream 6419 11246668 ~ 11253729 (+)
G162891 NA non-coding upstream 8052 11225660 ~ 11252096 (+)
G162893 NA non-coding upstream 23229 11234723 ~ 11236919 (+)
G162892 NA non-coding upstream 25561 11215987 ~ 11234587 (+)
G162875 NA non-coding upstream 156497 11103337 ~ 11103651 (+)
G162761 NA non-coding downstream 23507 11315602 ~ 11350125 (+)
G162954 NA non-coding downstream 99225 11391320 ~ 11391618 (+)
G162955 NA non-coding downstream 99544 11391639 ~ 11395583 (+)
G162964 NA non-coding downstream 119287 11411382 ~ 11423557 (+)
G162974 NA non-coding downstream 141700 11433795 ~ 11434026 (+)
G162821 NA other upstream 391708 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 519597 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 758505 10471835 ~ 10511071 (+)
G162297 NA other upstream 1038924 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 1214265 10039358 ~ 10047210 (+)
G162951 NA other downstream 200506 11492601 ~ 11496119 (+)

Expression


Co-expression Network