CI01000030_10664189_10683103 (MCM2, MCM2.L)


Basic Information

Item Value
gene id CI01000030_10664189_10683103
gene name MCM2, MCM2.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10663384 ~ 10683381 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_10664189_10683103.mRNA
CCATAAATGGCAGTCATGATAATGAAGCCCCTAGACTTGCTTCAGTTTTACATTCAATAATTTAGAATGTGAAAACACTTCCTTTAATTGTTTCTTATCTTTCAAATGTATGACTGGAATCTACAAAGCCATCATTGTCATTAATTAGGCTTTGGGTGGTGGTGTAATGTCCATGACAGATGGTTGCCAGAGTGAAGATTGAATTTAATGGCGGTTTTTCTTCTTTGAAGTGTCACTCAGCAATGTCTTGAGTGCAGGAAATAATTTCTGCCCCATTCAGAGAGCCCCTCTGGTCACAAAAGACCCCATGCATCAGCTCCCCAGCACTGAAATAGTTTCACACAGATCTGCTCTTTCTTGTCCTGCAAACTGTGGTGAAGTCATCCAGTTGCATTTGTGAATGTGATTCGTTCTTTTCCTTCTTTTTTCTTCTCAAACTGATCAATTTTCTTTTTATTTAGACAGCATTAAACACATTCTAAGGTGTTTTTCGATCATTTAAAGGAGATCTGGTGATCTCAAACTCTTTGTAAATGGCTCCTAAAACAGGTTCCTTCACATGTCATTCATTTTAAAAGAGTAAAGTGATCACAACAGCTTTCTAAGAACAGAACGAACAGGATTTTTCACAGCATTTGTTGACAACTGTGTGATAAAGACAGTCTAAAGTCATGATTTTTCATTCATTTGTATTAATGATCATTGGTTTTAAAGAAAGTGTCATTATGAATATAATTCACTGGATTGTCCACTAATGTTGCATATCTCTAATTTGGTTTCTTTCATTTCATGTTTAACAGGCATCATGAAGGTCGCTTCTTTCAATGTCCAGAGATTTGGGAAGTCAAAACTCTCTGATCCGTTCGTGCTGAAAACCCTGATCAAGGCAATAGTGTCACGCTATGACATTATTGTCATTCTAGAGGTGGTGGATTCTAGTGGAGCTGCTGTGGATAATTTTCTCACAGAACTGAATAAGTTCAACAAGACTCATCATTACACCATGGAGATCAGCACACGCCTGGGAAGAGGAAATTACAAAGAACAGTTCATGTTCCTTTACAGGGACGACCTGGTGGATTTGATTGGGTCCTACCAATACAAAGATAACCAGCCAGGAGATGAAGATGCTTTCGCCAGAGAACCTTATGTTCTGCGATTCAAATGTCATAAAACAGTATTGGAAGATTTGGTGCTGATGCCTGTCCACACAAAGCCTGAGGATTCAGTGAAGGAACTTGATGAACTGTACGACGTGTTTCAGGATGTCAAGAAGAAATGGAAGACGGATAACATCATGATTTTGGGGGACTTCAATGCAGATGGTAGTTATGTGTCTGATAAAGACATGAAAAAAATCCGCATCCGCAGTGACAAAAACTTCCATTGGCTGATCACGGATGACGAGGACACCACAGCCAGCACAAACAACGACAACACTTATGACCGAGGCAAGATCGACGTATATGTAATACTAAGATCCTCAGCTTCCATTGGTTCGCGCTTCGGGTATCCGAGATGGAACCTCCACAGAACTTATTGCACCCAGCAACAAAGCCCAAAAGATGAACCGAATAAAATTATGTCCGTTAAAGACCGCACAGCATCTGCGTTAACGTATGCTGGAGAGCTAGGGAAACAGTGGGGCCGAAATTTGGTGAAAACCACAACAGTGACCGTCAACTACTGGTGGGAGCGCTATGAAGAGTTTGTCGGGCTTAATGAAGTCCGAGATGCTCAGTCCAATGTCACAGAGGCTGAAAAGGCCTTCATGGTCGCCAGGGGAATCGTCAGAGAAGCTCACACCAGCCTGGAGGCTCTACAAGTTCGGCTGAAGGAAGTGAGGGACCGTTTGGACCGCGTGTCACGCGAAGAGGCACATTACTTAGAGTTAGCCACACTGGAACACAAGCTACTGCAGGAAGAACGGCGCTTCAGAATGGCCTATGAGAATGCAGAAGAAGGCGAGCGAGAGAAGTTTGCGCTCTTCTCAGCCGCAGTGCGAGCAAGCCACGAGAAAGAAAGGACCAGGGCCGAACGTACCAAAAACTGGTCTGTCATTGGTTCAGTGTTAGGCGCCCTCATTGGGGTGATGGGCTCCACTTACATAAACCGGGTACGTTTGCAAGAACTCAAGAACTTGTTGCTGGAGGCCCAGAAGGGACCGGTGAGTCTTCAGGAAGCGATTAAGGTCCAGGCCAGCATGCACAAAACGCAACAAGATGAACTCAGCAACCTCATCAACTCACTCAGGGCGACTGTGAAAGGCGGTGTAGAAGATGCGAAAACAGTAAAACCAGTGTTCGTCCCACCAGCGGCTGCCGTTGTCCCAACTTCTGCATCTAATGCCTCAGAAGAAGCGATTAGAGAGATTCTCCAACACAGCCAAAGAGCCCAAGGGCTCATTGAAAGCCTCAAACCACAGCTGGAGCAGCTGGAGGAGAATGTCGGGAAGGTCGGGACGGAGCTACATGCGGTGAAAACGACCCTGCAGTCTCGTCACTTGGAGAAGCCAGTCATTCAAACCCGAGACACTCAGCTCTTTGTTTGTGATACAGAGCCTTTCGCGCGCGCTTTGTGGTCACGTGGACCATTTCGCGCGAAAACTCAGTCTTCCCGGGAAAAACTAGTCTACAGTCGAGCTGCTGTTGAAGACAGACGTGAGAAGATGGCGGATTCATCAGAGTCATTTCACATGGCCACCAGCCCCAGTCGCGGCTCTCGGCGGGGTGACCTGACCTCCAGCCCTGGCAGAGATCTGCCCCCATTTGAGGATGAGTCCGAGGGGATTCTGGGAGACAATATTCCTGATGAGGAGGACGCAGATGGAGAGGAGCTGATCGGAGATGGGATGGAGAGAGACTACCGCGTCATCCCGGAACTGGACCGTTATGAAGCGGAGGGTCTGGATGAGGATGAAGATCTCAGTGAACTCTCGCCCGGCGCTCGGGCGGAAGCAGAAGCGGCCATGAGACGGCGGGACCGAGAACAGGGCCTTGGCCTGGGCCGCATCGGACGCGGACTGCTCTACGACAGTGAGGACGAGGATGACAAACGGCCCACAAAGAGGCAGCGGACTCTTGCAGAGAGAGCAGCCGATGGCGTGGCGATGGAAGGCGAGGATGAAGAGATGATCGAAAGCATTGAGAACCTGGAGGACATGAAGGGCCACACGGTCAGAGAGTGGGTCTCAATGGCCGCCCCGCGACTTGAGATCTACCACCGCTTCAAGAACTTCCTGCGCACGCATGTGGATGAGCACGGACACAACGTCTTCAAAGAGCGCATCAGTGACATGTGCAAAGAAAATAAGGAGAGTTTGCTGGTGAACTACGAGGAGCTGGCATCCAGGGAGCATGTGCTGGCGTATTTTCTGCCGGAGGCTCCCGCCGAGATGCTGAAGATCTTTGATGAAGCTGCGAAAGAGGTGGTGCTGGCCATGTACCCCAAATATGACCGAATCGCACATGAAATCCACGTCCGCGTCGGCAACCTGCCGCTGGTGGAAGAACTTCGATCGCTCAGGCAGCTTCATCTGAACCAGTTGATCCGCACTAGTGGGGTCGTGACCAGCTGCACTGGAGTTCTGCCGCAGCTCGGTATGGTGAAATACAACTGTAATAAGTGTAACTTCATCTTGGGTCCGTTCTTCCAGTCCCAGAACCAGGAGGTGAAGCCAGGCTCCTGTCCGGAGTGTCAGTCACTTGGTCCTTTCGAGATAAACATGGAGCAGACTGTGTATCAGAACTACCAGCGAATCACCATTCAGGAGAGTCCTGGGAAAGTTGCGGCGGGCCGCCTGCCTCGCTCCAAAGACGCCATCCTGCTGGCCGACTTGGTGGACACCTGCAAACCTGGAGATGAGATTGAGCTCACAGGAATCTACCACAACAACTACGACGGCTCTCTCAACATGGCTAATGGCTTCCCCGTCTTTGCCACCGTAATCCTGGCCAATCACATTGCCCGTAAGGATGAGGGCGTGGCCGTGGCAGAGCTCACCGATGAAGACATCAAAGCCATCATGGCTCTGTCTAAAGACGAGCGCATCGGAGAACGGATTTTCGCAAGTATCGGGCCTTCCATCTATGGGCACGAGGACATTAAACGCGGTCTGGCGCTTGCTTTGTTTGGCGGCGAAGCCAAGAATCCAGGCGGGAAGCACAAGGTGCGTGGCGATATTAACGTTCTCCTGTGTGGAGATCCAGGCACAGCCAAGTCCCAGTTCCTAAAGTACGTCGAAAAGATTGCGAGCCGGGCGGTTTTCACTACAGGGCAGGGTGCATCCGCTGTGGGTCTGACGGCTTACGTGCAACGCCATCCCGTGAGTCGAGAGTGGACGCTTGAGGCAGGAGCTCTGGTGTTGGCGGACCGAGGAGTCTGTCTCATTGACGAGTTCGATAAGATGAATGATCAGGACAGGACCAGCATCCATGAGGCCATGGAGCAGCAGAGCATCTCCATTTCTAAAGCTGGGATCGTCACATCGCTGCAGGCTCGCTGCACTGTCATCGCTGCCGCCAATCCTATCGGTGGGCGCTACGATCCGTCTCTCACGTTCTCCGAAAACGTGGACCTGACGGAGCCCATCATTTCTCGATTTGACGTTCTGTGCGTTGTAAGAGACACCGTCGACCCTGTGCAGGATGAAATGCTGGCTCGCTTTGTGGTGGGTAGCCACATCAAACATCACCCAAGCAACAAAGAAGGGGGCGTGGCTGGTCTAGAGGAAGTGTTGCTGCCAAACACCTCCGATGCCCCGCCCATCCCTCAGGAGCTGCTCAGGAAGTACATAATGTACGCAAAAGAGCGAGTGCGACCGAAACTCAATCAGATGGACCAGGACAAGGTGGCCCGAATTTACAGCGATCTTCGAAAAGAGTCTATGGCTACGGGAAGTATCCCGATCACCGTGCGTCACATAGAGTCTATGATCCGCATGGCCGAGGCACACGCCCGCATGCACCTGCGGGACTACGTGCTTGAGGACGACGTGAACATGGCCATCCGTGTCATGCTGGAAAGCTTCATTGACACGCAGAAGTTCAGCGTGATGAGGAGCATGCGGAAGACGTTCGCACGGTATCTGGCCTTCAGGCGAGACAACAATGAGCTGTTGCTCTTCATCTTGAAGCAGCTGGTTTCTGAGCAAGTCGCATATCAGCGCAATCGTTATGGAGCCCAACAGGACAACATCGAGATTCCAGAGAAGGACCTGGTGGACAAGGCCCGACAGATTAACATCCACAGCCTGTCTGCATTTTACGACAGTGACCTGTTCCGCTCTAACAAATTCTCCCACGATGCCAAGAAAAAGCTCATCGTTCAGCAGTTCTAGGCAATCCTCCTGGATTTGGTCACAAGGAGTTGTGTAGAATCTCCCGGACTTGTATATAATTCCGTCGTGGTTGTTGGACCAGCCGTTACATGGATTGAAAATTGTTTTTTGTCCATTCATGAACTTATTACCGTAGTCATTACGGTTGTAGTGATCTTCTTGGCTCATGTGGTTTATTGGCTGCATGTGACATCTTGAATTTTCCCCTGTTGTCAAATTATTTGAATGTTGTAAAAATGAAGAGGAAAAAAAAACTTTTGTACTATTTGTTTTGAACA

Function

symbol description
mcm2 Enables chromatin binding activity. Acts upstream of or within regulation of cilium assembly; retina development in camera-type eye; and thymus development. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain neural rod; midbrain neural rod; optic vesicle; paraxial mesoderm; and thymus. Human ortholog(s) of this gene implicated in Alzheimer's disease and autosomal dominant nonsyndromic deafness 70. Orthologous to human MCM2 (minichromosome maintenance complex component 2).

GO:

id name namespace
GO:0042393 histone binding molecular_function

KEGG:

id description
K02540 MCM2; DNA replication licensing factor MCM2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_10664189_10683103.mRNA True 5616 mRNA 0.50 26 10663384 10683381

Neighbor

gene id symbol gene type direction distance location
CI01000030_10646148_10649874 NA coding upstream 13447 10645873 ~ 10649937 (+)
CI01000030_10642268_10643835 NA coding upstream 19070 10642268 ~ 10644314 (+)
CI01000030_10628602_10631875 BCDIN3D coding upstream 31272 10628602 ~ 10632112 (+)
CI01000030_10605608_10626845 CERS5 coding upstream 36106 10603370 ~ 10627278 (+)
CI01000030_10596446_10602032 NA coding upstream 59747 10596217 ~ 10603637 (+)
CI01000030_10689813_10702377 NA coding downstream 6067 10689448 ~ 10702993 (+)
CI01000030_10716988_10729316 NA coding downstream 33048 10716429 ~ 10729662 (+)
CI01000030_10738658_10751094 NA coding downstream 54706 10738087 ~ 10751548 (+)
CI01000030_10753303_10762765 NA coding downstream 69922 10753303 ~ 10762765 (+)
CI01000030_10766284_10769462 NA coding downstream 82903 10766284 ~ 10769484 (+)
G162365 NA non-coding upstream 12513 10650424 ~ 10650871 (+)
G162722 NA non-coding upstream 21351 10641805 ~ 10642033 (+)
CI01000030_10537146_10539791 NA non-coding upstream 39576 10536191 ~ 10540258 (+)
G162694 NA non-coding upstream 99067 10522304 ~ 10564317 (+)
G162366 NA non-coding upstream 147568 10513888 ~ 10515816 (+)
G162306 NA non-coding downstream 21540 10704921 ~ 10712174 (+)
G162793 NA non-coding downstream 105386 10788767 ~ 10789149 (+)
G162794 NA non-coding downstream 110429 10793810 ~ 10794162 (+)
G162795 NA non-coding downstream 110862 10794243 ~ 10794464 (+)
G162813 NA non-coding downstream 167263 10850644 ~ 10850977 (+)
CI01000030_10473378_10509560 NA other upstream 161741 10471835 ~ 10511071 (+)
G162297 NA other upstream 442160 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 617501 10039358 ~ 10047210 (+)
G162449 NA other upstream 1306370 9356403 ~ 9357014 (+)
G162137 NA other upstream 2091658 8568010 ~ 8571726 (+)
G162821 NA other downstream 182631 10866012 ~ 10868440 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 657374 11362114 ~ 11380772 (+)
G162951 NA other downstream 809220 11492601 ~ 11496119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020789 mcm2 coding NC_007133.7 CM002906.2 5632029 ~ 5655680 (-)
bowfin (Amia calva) AMCG00016972 mcm2,LOC106583719 coding CM030122.1 CM030122.1 38400730 ~ 38415204 (+)