CI01000030_10958494_10960930 (TNFAIP8L1)


Basic Information

Item Value
gene id CI01000030_10958494_10960930
gene name TNFAIP8L1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10957157 ~ 10962204 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_10958494_10960930.mRNA
CTATAAGAGTAACAGGCCGGTAACTTATTGACAGAGACAGGAGGATATGACCTTATTCCCTGGACTGCAAAGTTCACTTACATGGAGGCTTTGCTTGTAACCTAGGAAACATTAACCGTCGGCATACTTTCAGTTGTCTGGGATGAACCTTCGTTATGTTTCGTAGCTTTTATAAATGGCTTTTATTATATTTTATAGACCTAAAGCCTTTACCCCTAAAACTTTGAGACTTTGTTGACATCTTGAATTGAGAGTCAGGTCAATATATGCAGTTTTAGTTCATGAAGGCACAGTGATGCTGACTAGGCATTTTGTATGTGTCTGGAGACAGTGGATTTAGGAAAACCCCTCATCCATCTTAGGCAGTTTAACTTTACTAGTGGTTGACCGATATGGTTTTGTAAAGGGTACAAGCCAATGCTATGACCTAAGAGTAATTTTGAAGTAAAGTTTAAAATAAGAAATACAGTCACATTATGAGTTGCAGTTATGAGAAACAAAGTTGTAATAGCGAAAAGTTGCCAGTCCAAGAAATAAAGTCACAATTACCTTTTTATTATTTATTTTTTTAACTCTGTGGTGGAAACTAGTTAAATATTATGTTGCTATTAAATTAAAAAAAATGTAATGACAGCAAAAGAGATTGCACTCAATATATGATCAAAAATCACAAAAAAAAACAGACATTTGCTCATCTTTCCGGCATCTCATAACTAATGATCACTAATTCCGTCAGAGAGACTCATAATGAACATTTTAAGCTTTGATAACCTTTGCACAAAAACACATTTAGTCGACCCAAACCCTTATTCCTAAATTGGTTCATGCATTATTAAAGTGTGGAACTATTTTGTGGAACCGCTGAATAATTCATGCCACCGCAGGCTTCTCTAGATCTGTGTGGCCAGAAAAAAAAAAAGAGTGCATTTTTCGTATCATTTTGACTATAGCCTATGAACCCTGCAGAGCAGACGAACATTGAGACAGAATGCAAAATCACATGAAAGACATGCTGCTATTACTGTTTCATGCTGTGGTTGTGTTGTCTCAGTCCATACCTGAAAACAGAGCTAGCTTGAGTTTGGACAGTGGCCCTTTTGTTGGCCTTTCCAGCTGCAGGAAGCTTGTTTCTCGTTTCCTTAAGGCATAATTGCTGAGGAGGGTCATTGGGCATCAAGAGGGTCTAGTATACTCAGAGAAGGCAATCTATTAGGTGTAGTTCCAGCATCTACCAGCAGGGTGAAAGATAACAGCCAACCCTACAGGTGAAATCACTCACACACTTACACACCTGAAACAATCAGATCACACAGACAGGCATGGCTCAGTGATCACCAATGTCCTCCATGGTCCTCCACAATCTCTCGCTTTCCCACTCCCCAATCATGGAGAACGTAACCTTATACCTCCAGGAAGGAAATGTGCACAAAGAGACCTTTTTATGTCTCGCCTTTTTGATGAGAAAAGTCGACATCATGGACTCGTTCAGCACCAAGAACCTGGCCCTGCAGGCCCAGAAGAAGCTCATGAGCAAGATGGCGACCAAGACGGTGGCCAACCTCTTCATAGATGACACTAGCAGTGAGGTACTGGACGAGCTTTACCGGGTGACCAAAGAGTACACGCGCAACCGCAAGGAGGCTCAGAAGATCATCAAGAACCTAATTAAGATGGTGGTCAAGTTGGGCGTCCTCTACCGCAACGGCCAGTTCAACAACGAGGAGCTCGCGCTGATCGAGCGCTTCCGAAAGAAGGTGCACACGCTCGCGATGACGGCCGTTAGCTTCTACCAGATCGACTTCACCTTCGACCGCCGCGTCATGAGCAACTTACTCAACGACTGCCGCGAACTGCTGCATCAGGCCATCAACCGGCACCTGACGGCCAAATCTCACGGCCGTATCAACCACGTCTTCAATCACTTCTCCGACTGTGACTTCCTTGCGACGCTGTACGGACCTTCGGAAGTGTACCGCGGCCATTTGCAGAAGATCTGTGAAGGAGTCAACAAGATGTTGGATGACGGCAATCTTTGATGACTACCTGTTGTCTTTATGGAAATGATTTGAACATTTTCTTCAAGTGGAGCTTAAGCTCAGAAGATCTCGTGCCTTATTTGTGCATTGGACGCTAAATGAATGTAGAACATAACGTTGTTCTCCTTGGCTCCTGTCTTTTTAGACACGACTCACGAGGTGGTTTACAGCGCAAACTCAAAGCGACCCAATGCAAATCTCACTCCTGTTTGTCTGAAGGTAATTTAAGAACTCAGATTCACTATCAGAGGAAATGAAGGACCATTTTCAAACCTTTTGATGCCGAGAGGAAACATTCATTTCAAGCACTGCAAACACAAAACACACTGGGGGAGGTGTATGAAACGTTTTATCTCTAATTTTAGGAAATGAGCCTGCAGCATCAAACTCTCGCTTCCAGTAAATAGATAGAAACGCTAACTCAAAAAGACTGTTTTTTTTTTTGTTGTTTTTTTTGGACTTATCTGATGTCATTTTGAGGTTGATACTGAGCTATTTGTAAACGATCACCCCTGTGACTTCCAAACTTGGTCATATGTGGTTTACGTTCATCTTATGTTTGTTTTTCACTCCATACCGCCCCCTGCTGATGGGAGGTCTTTACCATGATGCAGTTTCTTGCCGAGGAACGAAGAAATGTGCTAGAATGTCACTGTACTACATTTCAGCATGTTTATTTGCTGTTTTAATGAAGGTTTTATATGTATAAATACATGCCTGAGCCGTTATTTTCCCTTATACTTCACTTTTGATTGTCTTTAAATTATATGAACACAGAATTCAATGTCCCATTTCTGCTGTCATTGTGTTTTAGCTCCAGCAGTTTTGACAGAGATCAATGGAATACTTTGGGTATTATACTGGGTAAAGTTAAGCTCTTTCAACATCCCTTGTGGAACGTTGGTTACCACAACAAAACTGTAAAAGAAATGCAGTGCACTTAATAGAAGTCTTTGCGGCAACTGTGTACTTGTCCCATAGACCGCCATTGTAAGTGCAAATCTGCCCACATTTTTATGTTTGTACGTGTTCTTGATTATAACCTAGAATATTACAGTCTTTTTACAAAATGGTGTAAACTCAAAATAATCACAAAGTTTGGATTGTTTTGGGATTCTTAAAGGCTCTTATTGAACAGTTTAATGTGCGCTCTTGGCCTCAGTTTCTTTATCTATGCACTTATTTTTATTATTTCCTTTTGTAAATCAATAACCGAGGGTTGTTTGAATTTGTCGTCTTGTGTCTAGATTTTTAAGCGAAGCTCGAGCTTACAA

Function

symbol description
tnfaip8l1 Predicted to be involved in negative regulation of TOR signaling. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in cytoplasm. Is expressed in otic vesicle; pectoral fin; pharyngeal arch; and pronephros. Orthologous to several human genes including TNFAIP8L1 (TNF alpha induced protein 8 like 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_10958494_10960930.mRNA True 3310 mRNA 0.41 3 10957157 10962204

Neighbor

gene id symbol gene type direction distance location
CI01000030_10936461_10939911 NA coding upstream 16367 10936461 ~ 10940790 (+)
CI01000030_10911224_10918511 NA coding upstream 38228 10908366 ~ 10918929 (+)
CI01000030_10860938_10862107 S1PR4 coding upstream 94865 10860768 ~ 10862292 (+)
CI01000030_10775818_10796010 NA coding upstream 160504 10773601 ~ 10796653 (+)
CI01000030_10766284_10769462 NA coding upstream 187673 10766284 ~ 10769484 (+)
CI01000030_10968005_10969830 NA coding downstream 4902 10967106 ~ 10970051 (+)
CI01000030_10993343_11015527 ZFR2 coding downstream 31139 10993343 ~ 11015855 (+)
CI01000030_11017331_11024754 MATK coding downstream 55127 11017331 ~ 11025102 (+)
CI01000030_11035570_11040272 RX1, RAX2 coding downstream 73053 11035257 ~ 11041233 (+)
CI01000030_11047852_11057798 CHERP coding downstream 85558 11047762 ~ 11057798 (+)
G162830 NA non-coding upstream 58709 10896840 ~ 10898448 (+)
G162827 NA non-coding upstream 74576 10882356 ~ 10882581 (+)
G162822 NA non-coding upstream 85977 10870534 ~ 10871180 (+)
G162819 NA non-coding upstream 100065 10856858 ~ 10857092 (+)
G162855 NA non-coding downstream 12557 10974761 ~ 10975108 (+)
G162859 NA non-coding downstream 19294 10981498 ~ 10982379 (+)
G162762 NA non-coding downstream 91069 11053273 ~ 11091871 (+)
G162875 NA non-coding downstream 141133 11103337 ~ 11103651 (+)
G162892 NA non-coding downstream 253783 11215987 ~ 11234587 (+)
G162821 NA other upstream 88717 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 216606 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 455514 10471835 ~ 10511071 (+)
G162297 NA other upstream 735933 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 911274 10039358 ~ 10047210 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 378551 11362114 ~ 11380772 (+)
G162951 NA other downstream 530397 11492601 ~ 11496119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020778 tnfaip8l1 coding NC_007133.7 CM002906.2 5153461 ~ 5171829 (-)