G162822


Basic Information

Item Value
gene id G162822
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10870534 ~ 10871180 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU184927
TTGAGTCTCCATTTTTTTATGAAACTTGCCAGATGCCCTTTTGCCTTTGCCGATATTCCAGTAAGCCATTATCTGTCATTCCTGAGGAAACATGATATTTCCAGAGCGATGAGTCACTGTTTGTGTTATTGAGACTGAAAAACATACCAAGCAGTTGCACTCACATGAACTAAATGCCAAAGAGGTTGCATAAACAAAGACTGAATCTGAATATGTTGCAGCAAGCACTGCGTAAAAAAAGAGTTTTACATTTTCTGAAGTGGCGTTTGTCACTTTAAGGCTCGCTCACACCAATGACAATAACTATAATGGTAAGTGTAATAGTGTTCACACCAACGCACATTAACGCTCAGTTTATTATAAGCACATGCTGCAGTTTTCTCACGAGCTCTTTAAAGCAGGATGGATTCTGATTGGCTGTCAATGTTTTATCATTCATCAACTGAAAAAAAAAAAAACATTCTTAAAGTGATTCCAATGGCATTGTTCCTCTGTGCTTTAATCGTTATAGTTGTGGTGTGGGCTATTCTTTCGAATTTAGAACAATTTTTAAAAACATTATCATTATAGTTTGGTGTGAACAGGCCTTTACTTTGGTTCCTTCTGGGATTTTTTTTCCCACAAGTAAGTTTTCTTAGAAAATTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184927 True 647 lncRNA 0.36 1 10870534 10871180

Neighbor

gene id symbol gene type direction distance location
CI01000030_10860938_10862107 S1PR4 coding upstream 8242 10860768 ~ 10862292 (+)
CI01000030_10775818_10796010 NA coding upstream 73881 10773601 ~ 10796653 (+)
CI01000030_10766284_10769462 NA coding upstream 101050 10766284 ~ 10769484 (+)
CI01000030_10753303_10762765 NA coding upstream 107769 10753303 ~ 10762765 (+)
CI01000030_10738658_10751094 NA coding upstream 118986 10738087 ~ 10751548 (+)
CI01000030_10911224_10918511 NA coding downstream 37186 10908366 ~ 10918929 (+)
CI01000030_10936461_10939911 NA coding downstream 65281 10936461 ~ 10940790 (+)
CI01000030_10958494_10960930 TNFAIP8L1 coding downstream 85977 10957157 ~ 10962204 (+)
CI01000030_10968005_10969830 NA coding downstream 95926 10967106 ~ 10970051 (+)
CI01000030_10993343_11015527 ZFR2 coding downstream 122163 10993343 ~ 11015855 (+)
G162819 NA non-coding upstream 13442 10856858 ~ 10857092 (+)
G162818 NA non-coding upstream 14066 10856049 ~ 10856468 (+)
G162817 NA non-coding upstream 15549 10854483 ~ 10854985 (+)
G162813 NA non-coding upstream 19557 10850644 ~ 10850977 (+)
G162795 NA non-coding upstream 76070 10794243 ~ 10794464 (+)
G162827 NA non-coding downstream 11176 10882356 ~ 10882581 (+)
G162830 NA non-coding downstream 25660 10896840 ~ 10898448 (+)
G162855 NA non-coding downstream 103581 10974761 ~ 10975108 (+)
G162859 NA non-coding downstream 110318 10981498 ~ 10982379 (+)
G162821 NA other upstream 2094 10866012 ~ 10868440 (+)
CI01000030_10473378_10509560 NA other upstream 368891 10471835 ~ 10511071 (+)
G162297 NA other upstream 649310 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 824651 10039358 ~ 10047210 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 469575 11362114 ~ 11380772 (+)
G162951 NA other downstream 621421 11492601 ~ 11496119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020088 NA non-coding NC_007133.7 CM002906.2 5296092 ~ 5297076 (+)