CI01000030_10993343_11015527 (ZFR2)


Basic Information

Item Value
gene id CI01000030_10993343_11015527
gene name ZFR2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10993343 ~ 11015855 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_10993343_11015527.mRNA
ATGGCGGCCAGTAATTATTATGGATTCACACATGCAGCTGCTGCTGCCGCCGGCCCGCAGTACAGCGCCCAGCCGCCTCCAGCATATTCCCACCCAACCACGGGCAGCTATAACGTCCAGCCCGCCCCCGGAGTTGCCCATACGGTGACGGCCTCGTACCCTGCGGCCACCGCCCAACCAGCACGTCCCGCAGTGACAGCCCCCTACCCCACCTACCAGCCCCATCCCGCCCCCAACTACGGCTACCGCCAGCCCGAAACGCCCCCGCAGCCGACAACCACCCCTCAAACCTACCAGGTGTTGACTGAACCGGAGAATTATACTTATGGCCGACCGCCGTCGGTCAGCAGCTACGAGAACAAGCAGTACTTTCAAACGAGCATCGCACCTGCGCAGCGAACCGCAACAGAGGCCTACTTCCAGACAGGGCTGAAAAGTGGCTACAGCCCCGTGAGCACAGTGTACAGTCAGCCGCCTGTTCAAAGACAGGTCGCGGCACTCAAACCCCCTCCCACCGCGAGCTCGGTGTCCTCGAGCTACACCATCTATCCCACCTCCACCAGCGTACAGCAAACTCCAGCCCCTATATCCACTTACACTCACAGTTCTTCCTTCAACTCCACAGCTGCTACGTCCTACTCCGGTACGGCTGCGTCTGATTCACATTCACATGCCACAAATAGCCACCAGCTATCGTCTAACGGTGTCGCTTTCTTTGTTGCTACAGCTGGTCTCAGCTATTCCAGCTATGAGTCTAGCGGTTACACGTCCGCACCGTCCAACACTGCGGTCACCAGCCCCGCCGTCAACGCGTACAAGAAGCCCATTTTCCACCAGAACAAGATCCAGAAGCCCAAAGGCCCACCTAAACAGCCGCAGCTGCACTACTGTGATATCTGCAAGATAAGCTGCGCCGGTCCGCAGACGTATCGAGAACATCTGGAAGGACAGAAGCACAAGAAGAAAGAGGCGGCTCAGAAGAGCGGCAGTCAGGTGACCAACGGCCCTCGCGGCGTCCAGACGCAGTTGCGCTGTGAGTTGTGCGACGTTTCGTGCACCGGCGCCGATGCTTATGCCGCGCACATTCGGGGATCCAAGCACCAGAAGGTGGTGAAGTTGCACACCAAACTTGGCAAACCCATCCCTTCCACGGACCCCGTTTTCGTGAGCTCCGCCTCTGCTGCCACGACGATGACTACTAGTAAAACGGCGGCGACAACAGCCGCTCCCACCCCTGCATCGGTGGCGCAGAAGACGCCAGTGACGGCTCCTTCCAAACCCGCGTCCACTCCTGTGAAAAAACCCACTGCTGCTAAAGTTGCCATTATCGGCAGTAGAGCATCCACAGCAGCTCCGGTAAAGTTGGAGGAGGTGAAGCCGTCCGTGGTCAAGACGGACCCTTCGAGTGATGATGAGGACGGTGACTGTGCAGGAGCTCAAGGAGACATTCAGCCTGTGGGACACGATTATGTAGAAGAGGTTCGAAATGACGACGGTAAGGTGATTCGCTTCCACTGTAAACTGTGTGAATGCAGTTTCAACGATCCCAACGCTAAAGACATGCACCTGAAGGGACGGAGACACCGGCTGCAGTACAAGAAAAAAGTGAACCCAGACCTCCCTGTGGAGATCAAGCCCAGCAATCGTGCGCGGAAGCTTCTGGAAGTCAAACTGCGCAAACAGAAGCAGAAATCTGTGCTGAAGAGACAGCAAGAGGACGAACAGCGCTGGCACATGGAAATGAGGAGATACGAGGAGGACATGTACTGGAGGAGGATGGAGGAGGAGCAGTTATATTGGGGCGAGCAGAGGCGCAGAATGGCTCCGCCCCCTCTAATGGGCCGGCCTAACATGCCGGTGCCGCCCCTACTGCCTGTGCGGCGGCCAGATTCGCCTGACGACCGCCACATCATGGCCAAACACTCTGCAATCTACCCCGTGGAGGAGGAGCTTCAGGCCGTCCAGCGAATCGTCTCACATTCTGAGCGCGCTCTCAAACTGGTGTCTGATTCACTGCTGGAGAAGGAGGCGAGTGCTGTGGACGACGCCGATGATGACGTGACGGACAAACAGTCAGAGTCTCAGGCTCGTGTTCTCAAAGGAGTCATGCGTGTGGGAATCCTGGCTAAAGGTCTCCTCCTGCGTGGCGACCGCAACGTCCAGCTCATCCTGCTGGCGGCCAAGAAACCCACCGTCTCTCTTTTGAGGACCGTCGCGGAGCAGCTGCCCAAACAACTAGCGACCTTTTCTGAAGATCAGTATGAGGTGCAGGTACACCCTGAGGAAGCCAACATCGTCATTTTTTCAAGCAAGGAACCAAAAATGCAGGTCACCATCTCTCTTACCTCGCCAGTGATGCGCGAAGACCCCGTCCCCAACATGGAGAAAGCGTCAGAGAAAGACCCTCCAGATGTCCTCAACAGGATCAAGTGCCTTGAGTATTTAGCAGCCCTGCGACATGCTAAATGGTTTCAGGCTCGGGCAAACGGTCTTCAGTCTTGCGTCATCATTATTCGGGTTCTGCGGGATCTGTGTCAGCGTGTACCTACCTGGGGCAAGATGCCCGACTGGGCTATGGAGCTGCTTGTGGAAAAGGCCATTAGCAGCGCATCCAGCCCCCTCAGTCCCGGGGAAGCTCTGCGGAGGGTCCTCGAATGCATTGCCACCGGGATTCTCCTGCCAGATGGTCCAGGTCTTCTCGACCCCTGTGAGAAAGGTCAAACGGATGCTCTGGGAAGCATGTCAAAACAAGCTAGGGAAGACGTGACCGCTAGTGCACAGCACGCACTGCGACTGTTGGCTTTCCGTCAGATCCATAAAGTTCTCGGCATGGGCTCCTTGCCGGCATCCAAAGCTGGAGCTCGTAACCGCAAGAGGCGACGAGACGGCAGTGATGCCGGGGAGGGAGAAGCCAACGAAAAGAAGGATAAAAAAGATGATTCTCAAGATCCTTGAGATGTCTGTGTAATCTTCTCAACCTGTTATGTCCTTTAAAATGTATAAATATCACTCAAAGAGGAAAAAATAACACTTGATCGTTCCGTTTTTTTTTCAAAAGGACGAGGAATGGAAAAAACGTAGTCGTTCCCCTTTTATGATGTAATATGTCTTTCTATTACATCTGAGCTGAAAATAGGCTGAAATACTCATGAAGTTTAAATGCAGTGTATCAGATGATGACTGAACGTCGCTACCAATCAGCGACCCACATATAATATAAACAGTTAATGAACGTCACATTAGATCTATTAGGCACTTTCACATATTAATGGCACTTAATTAA

Function

symbol description
zfr2 Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Orthologous to human ZFR2 (zinc finger RNA binding protein 2).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_10993343_11015527.mRNA True 3283 mRNA 0.55 19 10993343 11015855

Neighbor

gene id symbol gene type direction distance location
CI01000030_10968005_10969830 NA coding upstream 23292 10967106 ~ 10970051 (+)
CI01000030_10958494_10960930 TNFAIP8L1 coding upstream 31139 10957157 ~ 10962204 (+)
CI01000030_10936461_10939911 NA coding upstream 52553 10936461 ~ 10940790 (+)
CI01000030_10911224_10918511 NA coding upstream 74414 10908366 ~ 10918929 (+)
CI01000030_10860938_10862107 S1PR4 coding upstream 131051 10860768 ~ 10862292 (+)
CI01000030_11017331_11024754 MATK coding downstream 1476 11017331 ~ 11025102 (+)
CI01000030_11035570_11040272 RX1, RAX2 coding downstream 19402 11035257 ~ 11041233 (+)
CI01000030_11047852_11057798 CHERP coding downstream 31907 11047762 ~ 11057798 (+)
CI01000030_11067119_11069478 NA coding downstream 51179 11067034 ~ 11069525 (+)
CI01000030_11074061_11090319 NA coding downstream 57830 11073685 ~ 11090476 (+)
G162859 NA non-coding upstream 10964 10981498 ~ 10982379 (+)
G162855 NA non-coding upstream 18235 10974761 ~ 10975108 (+)
G162830 NA non-coding upstream 94895 10896840 ~ 10898448 (+)
G162827 NA non-coding upstream 110762 10882356 ~ 10882581 (+)
G162762 NA non-coding downstream 37418 11053273 ~ 11091871 (+)
G162875 NA non-coding downstream 87482 11103337 ~ 11103651 (+)
G162892 NA non-coding downstream 200132 11215987 ~ 11234587 (+)
G162891 NA non-coding downstream 209805 11225660 ~ 11252096 (+)
G162893 NA non-coding downstream 218868 11234723 ~ 11236919 (+)
G162821 NA other upstream 124903 10866012 ~ 10868440 (+)
CI01000030_10738658_10751094 NA other upstream 252792 10738087 ~ 10751548 (+)
CI01000030_10473378_10509560 NA other upstream 491700 10471835 ~ 10511071 (+)
G162297 NA other upstream 772119 10133299 ~ 10221224 (+)
CI01000030_10039688_10047019 NA other upstream 947460 10039358 ~ 10047210 (+)
CI01000030_11362386_11380216 CALR3A, CALR3, CALR3B other downstream 324900 11362114 ~ 11380772 (+)
G162951 NA other downstream 476746 11492601 ~ 11496119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006001 LOC102201084 coding CM030142.1 CM030142.1 13845624 ~ 13865346 (+)