Gene
RNA
| Item | Value |
|---|---|
| gene id | G162762 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 11053273 ~ 11091871 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU184863 | True | 1128 | lncRNA | 0.30 | 2 | 11053273 | 11091871 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_11035570_11040272 | RX1, RAX2 | coding | upstream | 12040 | 11035257 ~ 11041233 (+) |
| CI01000030_11017331_11024754 | MATK | coding | upstream | 28171 | 11017331 ~ 11025102 (+) |
| CI01000030_10993343_11015527 | ZFR2 | coding | upstream | 37418 | 10993343 ~ 11015855 (+) |
| CI01000030_10968005_10969830 | NA | coding | upstream | 83222 | 10967106 ~ 10970051 (+) |
| CI01000030_10958494_10960930 | TNFAIP8L1 | coding | upstream | 91069 | 10957157 ~ 10962204 (+) |
| CI01000030_11101642_11111505 | NA | coding | downstream | 8812 | 11100683 ~ 11113022 (+) |
| CI01000030_11114957_11124683 | NA | coding | downstream | 22997 | 11114868 ~ 11125104 (+) |
| CI01000030_11168935_11171909 | NA | coding | downstream | 76539 | 11168410 ~ 11172305 (+) |
| CI01000030_11184734_11195838 | NA | coding | downstream | 90835 | 11182706 ~ 11195865 (+) |
| CI01000030_11211094_11214554 | NA | coding | downstream | 117437 | 11209308 ~ 11214698 (+) |
| G162859 | NA | non-coding | upstream | 70894 | 10981498 ~ 10982379 (+) |
| G162855 | NA | non-coding | upstream | 78165 | 10974761 ~ 10975108 (+) |
| CI01000030_10911224_10918511 | NA | non-coding | upstream | 142710 | 10908366 ~ 10918929 (+) |
| G162830 | NA | non-coding | upstream | 154825 | 10896840 ~ 10898448 (+) |
| G162827 | NA | non-coding | upstream | 170692 | 10882356 ~ 10882581 (+) |
| G162875 | NA | non-coding | downstream | 11466 | 11103337 ~ 11103651 (+) |
| G162892 | NA | non-coding | downstream | 124116 | 11215987 ~ 11234587 (+) |
| G162891 | NA | non-coding | downstream | 133789 | 11225660 ~ 11252096 (+) |
| G162893 | NA | non-coding | downstream | 142852 | 11234723 ~ 11236919 (+) |
| G162895 | NA | non-coding | downstream | 154797 | 11246668 ~ 11253729 (+) |
| G162821 | NA | other | upstream | 184833 | 10866012 ~ 10868440 (+) |
| CI01000030_10738658_10751094 | NA | other | upstream | 312722 | 10738087 ~ 10751548 (+) |
| CI01000030_10473378_10509560 | NA | other | upstream | 551630 | 10471835 ~ 10511071 (+) |
| G162297 | NA | other | upstream | 832049 | 10133299 ~ 10221224 (+) |
| CI01000030_10039688_10047019 | NA | other | upstream | 1007390 | 10039358 ~ 10047210 (+) |
| CI01000030_11362386_11380216 | CALR3A, CALR3, CALR3B | other | downstream | 248884 | 11362114 ~ 11380772 (+) |
| G162951 | NA | other | downstream | 400730 | 11492601 ~ 11496119 (+) |
