XLOC_020083


Basic Information

Item Value
gene id XLOC_020083
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5118313 ~ 5122557 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041865
CGTGACGTACACGTTTGGATATATTCCCACGTGCAACTTGGCTCTCACAACGCATCAGACACAACGGAGATAAGACTGCGAATTCAGCTTTGAGTCGAACTCTTTTTATATATACCACTTTTATCGTAAGCGTTTTGCGGCATTAATTTGAAAATCGTCTACCATATTGGATACAATGAAGTTTATCATTGGAATAGGAGGtgtgaCTAATGGTGGTAAAACCACCCTGACGAACAGGTTAATAAAAGCCTTACCAAACTGCTGTGTGGTTCACCAAGACGACTTTTTTAAGTGATCGACGCTTTGGATATGGAGGCAATGGTGAACACCATCAAGGGTTGGCTGGAAAACCCAGTTAAATTTGCTCGCTCCCACGGCATCCAGGTGACCCCTGCCACAGAAATGGAGGATCCCGAAAGCCAAGTGCACATACTCATCGTAGAAGGATTTCTGCTGTACAACTACAAGCCTTTGCTTGACGTCTTTGACAAATCTTACTACATCACCATCCCATATGAGGAGTGCAAAAAAAGGAGAAGtacaAGGCAGTACACTGTTCCAGACCCTCCCGGGCTGTTTGATGGTCATGTGTGGCCCATGTACCTGAAACACCGATTCGCCATGGAGAACTGCGGTTTGCCAATCGAATACTTGGATGGCTTGAAAACAAAAGATGAAATTTACAACCAGGTTTACGAAGACGTTCACAACACACTCCTGAATCGTTTATAGCAGGAGGAGGCTGCCGCTCACTGACTGTACATTATTGTAAATACTAATGTTACTTAaggccttttttgttttttttaacatggaaatttttgtaaatattttgacTTGAATGTAACTTAAATCcttgttttgcattattttgtgGACAGAGtccatattttaagtttttattatttttaaattgttttgcctTCCAAAGCACTCTGTTCAAAGACTTCATTCTGTTTACTACTCAGCAAATGAATTTTCCAATGTTTTCACCATGCTTGTACCAATAAACATTGTGCTTTGACTTTACACTTgttatattttgcattttatttaatctaCTTTTTGCTGTAAGATTATCGATattaaaacaattcattttaatGTGGTTCACTTAGCCAttgttaaataacattttagtgtATTCTTTCTTACCAATGTCCTGGATTTAATTATGACTGTATGTTTAGCTTTATGTAAAGAATTTAAAGCTGAAGGAATAAGCAAAGAAAAATGCATATCCAAATCATTAATGGTTTTTCCCCTTGTAAAGTTGCCTTCAAATTAAGTAAAACCTAACAAATGACATGGTCTGGGTGTATCTTGTGTTTCCAAATTAGCTCATATTAAAGCATGGATTATTTTGACTAAAATATAACCTTTTAAATGCATACAGAGGTCTCCATTATCAAATAATCAGCTCTTCCTGTTACACAAATTCAAGCTCCACTCTCCTATTTATTGCTGTGTCAAATAAAAGCCTATGCTAACATTCAACCTGCATGAAAACAA
>TCONS_00040036
AACGCATCAGACACAACGGAGATAAGACTGCGAATTCAGCTTTGAGTCGAACTCTTTTTATATATACCACTTTTATCGTAAGCGTTTTGCGGCATTAATTTGAAAATCGTCTACCATATTGGATACAATGAAGTTTATCATTGGAATAGGAGGtgtgaCTAATGGTGGTAAAACCACCCTGACGAACAGGTTAATAAAAGCCTTACCAAACTGCTGTGTGGTTCACCAAGACGACTTTTTTAAGCCGCCGGATCAGATAGCAGTCGGAATGGACGGCTTTAAACAGTGGGATGTGATCGACGCTTTGGATATGGAGGCAATGGTGAACACCATCAAGGGTTGGCTGGAAAACCCAGTTAAATTTGCTCGCTCCCACGGCATCCAGGTGACCCCTGCCACAGAAATGGAGGATCCCGAAAGCCAAGTGCACATACTCATCGTAGAAGGATTTCTGCTGTACAACTACAAGCCTTTGCTTGACGTCTTTGACAAATCTTACTACATCACCATCCCATATGAGGAGTGCAAAAAAAGGAGAAGtacaAGGCAGTACACTGTTCCAGACCCTCCCGGGCTGTTTGATGGTCATGTGTGGCCCATGTACCTGAAACACCGATTCGCCATGGAGAACTGCGGTTTGCCAATCGAATACTTGGATGGCTTGAAAACAAAAGATGAAATTTACAACCAGGTTTACGAAGACGTTCACAACACACTCCTGAATCGTTTATAGCAGGAGGAGGCTGCCGCTCACTGACTGTACATTATTGTAAATACTAATGTTACTTAaggccttttttgttttttttaacatggaaatttttgtaaatattttgacTTGAATGTAACTTAAATCcttgttttgcattattttgtgGACAGAGtccatattttaagtttttattatttttaaattgttttgcctTCCAAAGCACTCTGTTCAAAGACTTCATTCTGTTTACTACTCAGCAAATGAATTTTCCAATGTTTTCACCATGCTTGTACCAATAAACATTGTGCTTTGACTTTACACTTgttatattttgcattttatttaatctaCTTTTTGCTGTAAGATTATCGATattaaaacaattcattttaatGTGGTTCACTTAGCCAttgttaaataacattttagtgtATTCTTTCTTACCAATGTCCTGGATTTAATTATGACTGTATGTTTAGCTTTATGTAAAGAATTTAAAGCTGAAGGAATAAGCAAAGAAAAATGCATATCCAAATCATTAATGGTTTTTCCCCTTGTAAAGTTGCCTTCAAATTAAGTAAAACCTAACAAATGACATGGTCTGGGTGTATCTTGTGTTTCCAAATTAGCTCATATTAAAGCATGGATTATTTTGACTAAAATATAACCTTTTAAATGCATACAGAGGTCTCCATTATCAAATAATCAGCTCTTCCTGTTACACAAATTCAAGCTCCACTCTCCTATTTATTGCTGTGTCAAATAAAAGCCTATGCTAACATTCAACCTGCATGAAAACAAA
>TCONS_00040037
GACACAACGGAGATAAGACTGCGAATTCAGCTTTGAGTCGAACTCTTTTTATATATACCACTTTTATCGTAAGCGTTTTGCGGCATTAATTTGAAAATCGTCTACCATATTGGATACAATGAAGTTTATCATTGGAATAGGAGGtgtgaCTAATGGTGGTAAAACCACCCTGACGAACAGGTTAATAAAAGCCTTACCAAACTGCTGTGTGGTTCACCAAGACGACTTTTTTAAGCCGCCGGATCAGATAGCAGTCGGAATGGACGGCTTTAAACAGTGGGATGTGATCGACGCTTTGGATATGGAGGCAATGGTGAACACCATCAAGGGTTGGCTGGAAAACCCAGTTAAATTTGCTCGCTCCCACGGCATCCAGGTGACCCCTGCCACAGAAATGGAGGATCCCGAAAGCCAAGTGCACATACTCATCGTAGAAGGATTTCTGCTGTACAACTACAAGCCTTTGCTTGACGTCTTTGACAAATCTTACTACATCACCATCCCATATGAGGAGTGCAAAAAAAGGAGAAGgtacaAGGCAGTACACTGTTCCAGACCCTCCCGGGCTGTTTGATGGTCATGTGTGGCCCATGTACCTGAAACACCGATTCGCCATGGAGAACTGCGGTTTGCCAATCGAATACTTGGATGGCTTGAAAACAAAAGATGAAATTTACAACCAGGTTTACGAAGACGTTCACAACACACTCCTGAATCGTTTATAGCAGGAGGAGGCTGCCGCTCACTGACTGTACATTATTGTAAATACTAATGTTACTTAaggccttttttgttttttttaacatggaaatttttgtaaatattttgacTTGAATGTAACTTAAATCcttgttttgcattattttgtgGACAGAGtccatattttaagtttttattatttttaaattgttttgcctTCCAAAGCACTCTGTTCAAAGACTTCATTCTGTTTACTACTCAGCAAATGAATTTTCCAATGTTTTCACCATGCTTGTACCAATAAACATTGTGCTTTGACTTT
>TCONS_00040038
GGAGATAAGACTGCGAATTCAGCTTTGAGTCGAACTCTTTTTATATATACCACTTTTATCGTAAGCGTTTTGCGGCATTAATTTGAAAATCGTCTACCATATTGGATACAATGAAGTTTATCATTGGAATAGGAGGtgtgaCTAATGGTGGTAAAACCACCCTGACGAACAGGTTAATAAAAGCCTTACCAAACTGCTGTGTGGTTCACCAAGACGACTTTTTTAAGGTgagtttatttatatgtattatttactgCATATTTCTAGTTAGTTTTGTCAACTACATCTAATAGATCTTTAATAAAATGGAACAATAGCAGTATTTCTTTTCCTTTTGTTACGTTTACATTTTTAGTAATtttagtatatttatatatatatatatattttaaatatattttatttgctaaGTTTAAATGTAGCTCTTTGTTATTTTTCCTGATTTAGTAATGCATGCATGGGTATAAAATATAATGTTACGACAATAATCCAAGTAATGATATTGGATTTAATTTGGGTCTGTTTGAAATAGCTTGTGAGAGCTCAAAAATGCTGGTCCAAGATCAGTTTCCTCCTATCTCTCAAGTTGTATTCATCAGGTTATGATGGCCGAGACCTGATTCTAGATCAGCAGTCTGGCTCTCTAGCACACATGATGGCAGATGTAGATGATGGCATTTGCTACAGTGTTTTACTGGTCACTGTTATTTCAGCCGCCGGATCAGATAGCAGTCGGAATGGACGGCTTTAAACAGTGGGATGGTAAGAAAATATATGGTAGGAGAGAAATAACTCCTCATTTTAAGCATCGCCCTCCCGTAACAAAGACTTT
>TCONS_00042025
GGAGATAAGACTGCGAATTCAGCTTTGAGTCGAACTCTTTTTATATATACCACTTTTATCGTAAGCGTTTTGCGGCATTAATTTGAAAATCGTCTACCATATTGGATACAATGAAGTTTATCATTGGAATAGGAGGtgtgaCTAATGGTGGTAAAACCACCCTGACGAACAGGTTAATAAAAGCCTTACCAAACTGCTGTGTGGTTCACCAAGACGACTTTTTTAAGGTgagtttatttatatgtattatttactgCATATTTCTAGTTAGTTTTGTCAACTACATCTAATAGATCTTTAATAAAATGGAACAATAGCAGTATTTCTTTTCCTTTTGTTACGTTTACATTTTTAGTAATtttagtatatttatatatatatatatattttaaatatattttatttgctaaGTTTAAATGTAGCTCTTTGTTATTTTTCCTGATTTAGTAATGCATGCATGGGTATAAAATATAATGTTACGACAATAATCCAAGTAATGATATTGGATTTAATTTGGGTCTGTTTGAAATAGCTTGTGAGAGCTCAAAAATGCTGGTCCAAGATCAGTTTCCTCCTATCTCTCAAGTTGTATTCATCAGGTTATGATGGCCGAGACCTGATTCTAGATCAGCAGTCTGGCTCTCTAGCACACATGATGGCAGATGTAGATGATGGCATTTGCTACAGTGTTTTACTGGTCACTGTTATTTCAGCCGCCGGATCAGATAGCAGTCGGAATGGACGGCTTTAAACAGTGGGATGGTAAGAAAATATATGGTAGGAGAGAAATAACTCCTCATTTTAAGCATCGCCCTCCCGTAACAAAGACTTTACAATGTCTGTCCCTCCCAACCCATTTACATATCTCTCCAGTGTGGCTTTGCTATAATTAGACATTTAATAATCGAACTTTCAGCTTTTCGTTCGTTCTCTAAAAGCTTTGCTTTTGCCTTTGTAGTGATCGACGCTTTGGATATGGAGGCAATGGTGAACACCATCAAGGGTTGGCTGGAAAACCCAGTTAAATTTGCTCGCTCCCACGGCATCCAGGTGACCCCTGCCACAGAAATGGAGGATCCCGAAAGCCAAGTGCACATACTCATCGTAGAAGGATTTCTGCTGTACAACTACAAGCCTTTGCTTGACGTCTTTGACAAATCTTACTACATCACCATCCCATATGAGGAGTGCAAAAAAAGGAGAAGtacaAGGCAGTACACTGTTCCAGACCCTCCCGGGCTGTTTGATGGTCATGTGTGGCCCATGTACCTGAAACACCGATTCGCCATGGAGAACTGCGGTTTGCCAATCGAATACTTGGATGGCTTGAAAACAAAAGATGAAATTTACAACCAGGTTTACGAAGACGTTCACAACACACTCCTGAATCGTTTATAGGTGAGGGATCCAACCTGAATGTTTTATCTGAAAATGGATTGTAAATATTTGTGAGgcgttttaaaagtaacttgtttgtttgtcttcCAGCAGGAGGAGGCTGCCGCTCACTGACTGTACATTATTGTAAATACTAATGTTACTTAaggccttttttgttttttttaacatggaaatttttgtaaatattttgacTTGAATGTAACTTAAATCcttgttttgcattattttgtgGACAGAGtccatattttaagtttttattatttttaaattgttttgcctTCCAAAGCACTCTGTTCAAAGACTTCATTCTGTTTACTACTCAGCAAATGAATTTTCCAATGTTTTCACCATGCTTGTACCAATAAACATTGTGCTTTGACTTTACACTTgttatattttgcattttatttaatctaCTTTTTGCTGTAAGATTATCGATattaaaacaattcattttaatGTGGTTCACTTAGCCAttgttaaataacattttagtgtATTCTTTCTTACCAATGTCCTGGATTTAATTATGACTGTATGTTTAGCTTTATGTAAAGAATTTAAAGCTGAAGGAATAAGCAAAGAAAAATGCATATCCAAATCATTAATGGTTTTTCCCCTTGTAAAGTTGCCTTCAAATTAAGTAAAACCTAACAAATGACATGGTCTGGGTGTATCTTGTGTTTCCAAATTAGCTCATATTAAAGCATGGATTATTTTGACTAAAATATAACCTTTTAAATGCATACAGAGGTCTCCATTATCAAATAATCAGCTCTTCCTGTTACACAAATTCAAGCTCCACTCTCCTATTTATTGCTGTGTCAAATAAAAGCCTATGCTAACATTCAACCTGCATGAAAACAA
>TCONS_00040039
GTCGAACTCTTTTTATATATACCACTTTTATCGTAAGCGTTTTGCGGCATTAATTTGAAAATCGTCTACCATATTGGATACAATGAAGTTTATCATTGGAATAGGAGGtgtgaCTAATGGTGGTAAAACCACCCTGACGAACAGGTTAATAAAAGCCTTACCAAACTGCTGTGTGGTTCACCAAGACGACTTTTTTAAGTGATCGACGCTTTGGATATGGAGGCAATGGTGAACACCATCAAGGGTTGGCTGGAAAACCCAGTTAAATTTGCTCGCTCCCACGGCATCCAGGTGACCCCTGCCACAGAAATGGAGGATCCCGAAAGCCAAGTGCACATACTCATCGTAGAAGGATTTCTGCTGTACAACTACAAGCCTTTGCTTGACGTCTTTGACAAATCTTACTACATCACCATCCCATATGAGGAGTGCAAAAAAAGGAGAAGtacaAGGCAGTACACTGTTCCAGACCCTCCCGGGCTGTTTGATGGTCATGTGTG
>TCONS_00040040
CTGATTCTAGATCAGCAGTCTGGCTCTCTAGCACACATGATGGCAGATGTAGATGATGGCATTTGCTACAGTGTTTTACTGGTCACTGTTATTTCAGCCGCCGGATCAGATAGCAGTCGGAATGGACGGCTTTAAACAGTGGGATGGTAAGAAAATATATGGTAGGAGAGAAATAACTCCTCATTTTAAGCATCGCCCTCCCGTAACAAAGACTTTACAATGTCTGTCCCTCCCAACCCATTTACATATCTCTCCAGTGTGGCTTTGCTATAATTAGACATTTAATAATCGAACTTTCAGCTTTTCGTTCGTTCTCTAAAAGCTTTGCTTTTGCCTTTGTAGTGATCGACGCTTTGGATATGGAGGCAATGGTGAACACCATCAAGGGTTGGCTGGAAAACCCAGTTAAATTTGCTCGCTCCCACGGCATCCAGGTGACCCCTGCCACAGAAATGGAGGATCCCGAAAGCCAAGTGCACATACTCATCGTAGAAGGATTTCTGCTGTACAACTACAAGCCTTTGCTTGACGTCTTTGACAAATCTTACTACATCACCATCCCATATGAGGAGTGCAAAAAAAGGAGAAGtacaAGGCAGTACACTGTTCCAGACCCTCCCGGGCTGTTTGATGGTCATGTGTGGCCCATGTACCTGAAACACCGATTCGCCATGGAGAACTGCGGTTTGCCAATCGAATACTTGGATGGCTTGAAAACAAAAGATGAAATTTACAACCAGGTTTACGAAGACGTTCACAACACACTCCTGAATCGTTTATAGGTGAGGGATCCAACCTGAATGTTTTATCTGAAAATGGATTGTAAATATTTGTGAGgcgttttaaaagtaacttgtttgtttgtcttcCAGCAGGAGGAGGCTGCCGCTCACT
>TCONS_00040041
CTTTTCGTTCGTTCTCTAAAAGCTTTGCTTTTGCCTTTGTAGTGATCGACGCTTTGGATATGGAGGCAATGGTGAACACCATCAAGGGTTGGCTGGAAAACCCAGTTAAATTTGCTCGCTCCCACGGCATCCAGGTGACCCCTGCCACAGAAATGGAGGATCCCGAAAGCCAAGTGCACATACTCATCGTAGAAGGATTTCTGCTGTACAACTACAAGCCTTTGCTTGACGTCTTTGACAAATCTTACTACATCACCATCCCATATGAGGAGTGCAAAAAAAGGAGAAGtacaAGGCAGTACACTGTTCCAGACCCTCCCGGGCTGTTTGATGGTCATGTGTGGCCCATGTACCTGAAACACCGATTCGCCATGGAGAACTGCGGTTTGCCAATCGAATACTTGGATGGCTTGAAAACAAAAGATGAAATTTACAACCAGGTTTACGAAGACGTTCACAACACACTCCTGAATCGTTTATAGCAGGAGGAGGCTGCCGCTCACTGACTGTACATTATTGTAAATACTAATGTTACTTAaggccttttttgttttttttaacatggaaatttttgtaaatattttgacTTGAATGTAACTTAAATCcttgttttgcattattttgtgGACAGAGtccatattttaagtttttattatttttaaattgttttgcctTCCAAAGCACTCTGTTCAAAGACTTCATTCTGTTTACTACTCAGCAAATGAATTTTCCAATGTTTTC

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0007049 cell cycle biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005819 spindle cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko00230 Purine metabolism
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030404-1 Predicted to enable ribosylnicotinamide kinase activity. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Is expressed in several structures, including immature eye; nervous system; neural plate; proliferative region; and ventral mesoderm. Orthologous to human NMRK2 (nicotinamide riboside kinase 2).

Ensembl:

ensembl_id ENSDARG00000101362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041865 False 1512 lncRNA 0.37 7 5118313 5122556
TCONS_00040036 False 1514 mRNA 0.37 8 5118361 5122557
TCONS_00040037 False 1021 mRNA 0.41 8 5118370 5122072
TCONS_00040038 False 832 lncRNA 0.34 2 5118378 5119948
TCONS_00042025 False 2268 lncRNA 0.36 5 5118378 5122556
TCONS_00040039 False 500 mRNA 0.44 5 5118406 5121460
TCONS_00040040 False 894 lncRNA 0.44 4 5119733 5121798
TCONS_00040041 True 741 mRNA 0.40 5 5120033 5122035

Neighbor

gene id symbol gene type direction distance location
XLOC_020082 NA coding upstream 1689 5102773 ~ 5116624 (+)
XLOC_020081 NA coding upstream 149154 4966441 ~ 4969159 (+)
XLOC_020080 si:ch1073-104i17.1 coding upstream 160551 4947923 ~ 4957762 (+)
XLOC_020079 cers4a coding upstream 385207 4707663 ~ 4733106 (+)
XLOC_020078 NA coding upstream 430594 4680238 ~ 4687719 (+)
XLOC_020084 loxl5a coding downstream 922 5123479 ~ 5130024 (+)
XLOC_020085 mydgf coding downstream 12636 5135193 ~ 5145469 (+)
XLOC_020086 cers1 coding downstream 53698 5176255 ~ 5232099 (+)
XLOC_020087 dre-mir-23a-1 coding downstream 170656 5293213 ~ 5293301 (+)
XLOC_020088 NA coding downstream 173535 5296092 ~ 5297076 (+)
XLOC_020077 CR751224.2 non-coding upstream 440332 4677867 ~ 4677981 (+)
XLOC_020072 NA non-coding upstream 951203 4064601 ~ 4167110 (+)
XLOC_020089 dre-mir-27e non-coding downstream 177394 5299951 ~ 5300056 (+)
XLOC_020090 mir24-4 non-coding downstream 184928 5307485 ~ 5307574 (+)
XLOC_020095 NA non-coding downstream 515328 5637885 ~ 5640683 (+)

Expression


Co-expression Network