XLOC_020081


Basic Information

Item Value
gene id XLOC_020081
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4966441 ~ 4969159 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041864
tttaatataaatcaacattgtgcactggaaaggccgaacatgcagtgaaccttcatccaccattggataccgtcattggaccaactggctggaccctacagtcATACCGGTattaatgaaatgttcatgagtgaaattGAAACTGTCGAACTTTAGTTTAAGTATaaaaattaaagatgaaaaacccaaaattacatgaaactctgcaggaaacgtggatagcctggtgacgcaacattaaaaaagcatttcacgtaaacaccttaattacaTTATTGTcgtattcagattaaggcaaatatatAGATAACTGATATCCATGTTAACAAAGTCAGtggtgtcttcgaagtaagtaaATGATCCAGAAGgccatcctgctgatttgattgagaagggcactttttttgctAGATGGCTCAACAGTTTGACTTTCGTTCagcatcattcattttaaaaagcacctgctccattttatttgtatatgttttactcgaaTTTATTAACTCTACATGTGCCTGCTAGTTAGCTGTGGAGCTAACGTTAATCATATTCTCTCTAATGAAAGCATAAAAATCGTCCTCATAATTTACTCGAGTGCACGCCTCAAATTCTCGCGCCCCCCTTAATAGGTGCTGgcgccccacagtttgaaaacccagATCTGGATCACTTACCCATCTTCATGAGCATCTGATGACCCTTGTTTTCTTCTCCCAGTCTGAGGTCAGGAGGTATCGCAGCAGAGCTTGAACCCAAGCCAGATGTGGAGCTGggttaaaaatgaaaaagatgtAGATAATAATGAATGCACCGAAATGAACAGTCTAAACCCAAACTGAAGTTCCTGGTCGCACCGAGCAAGGCCAGTTTGTAATAGTTATTACAGATCCACTTACGGTGGTGTTGGACTGCGGGATTTTGTGGCATGGGGACGCTTTTCTGGAGATCGTGATCTAGATCTGGATTTGGAGCGAGAGCGACTTCCGGATCTGGATCTGGAGCGACTCTGGCTCCTACATAAGAAAGTGAAAAAATAGGTTCAGTAACTTTTTGTAGCTAGAAATAAACAgtttaaTTGCCAAAGCGGATGTTTTTTTCAGACCTGGAGCGAGATCTAGAGTAGGAGCGAGAACGAGAGCGGGATCTGGATCGGGATCTGGAGCGAGAGGATTTGGAAGATCTAGAGCTGGAGTGTGAAGAGGATCGTCCTCGGCTGTGTGACCGGCTGCGGGACCGACTCCCTCGGGCActgaataaaatgaacaaaattaaattaaacaagtaaTGTTATTTATTAGGAAACTATCGGAATCACTTTATA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048333 mesodermal cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041864 True 1321 lncRNA 0.42 2 4966441 4969159

Neighbor

gene id symbol gene type direction distance location
XLOC_020080 si:ch1073-104i17.1 coding upstream 8679 4947923 ~ 4957762 (+)
XLOC_020079 cers4a coding upstream 233335 4707663 ~ 4733106 (+)
XLOC_020078 NA coding upstream 278722 4680238 ~ 4687719 (+)
XLOC_020077 CR751224.2 coding upstream 288460 4677867 ~ 4677981 (+)
XLOC_020076 ctxn1 coding upstream 451784 4488454 ~ 4514657 (+)
XLOC_020082 NA coding downstream 133614 5102773 ~ 5116624 (+)
XLOC_020083 NA coding downstream 149154 5118313 ~ 5122557 (+)
XLOC_020084 loxl5a coding downstream 154320 5123479 ~ 5130024 (+)
XLOC_020085 mydgf coding downstream 166034 5135193 ~ 5145469 (+)
XLOC_020086 cers1 coding downstream 207096 5176255 ~ 5232099 (+)
XLOC_020072 NA non-coding upstream 799331 4064601 ~ 4167110 (+)
XLOC_020073 NA non-coding upstream 880967 4083596 ~ 4085474 (+)
XLOC_020070 CABZ01031768.1 non-coding upstream 1205570 3760757 ~ 3760871 (+)
XLOC_020087 dre-mir-23a-1 non-coding downstream 324054 5293213 ~ 5293301 (+)
XLOC_020088 NA non-coding downstream 326933 5296092 ~ 5297076 (+)
XLOC_020089 dre-mir-27e non-coding downstream 330792 5299951 ~ 5300056 (+)

Expression


Co-expression Network