XLOC_020084 (loxl5a)


Basic Information

Item Value
gene id XLOC_020084
gene name loxl5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5123479 ~ 5130024 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040042
ATgactaaatattcatttattttctgcttaTCCATACATTTatgtgttctggtgtttttaAATACTGCACAGAACCATGGAGCCTGGCAACACAAGGTTAAGTGGGAAACTAATGGGCAGGTTTACAGTTTACTGAGCGCCAGCTCTCAGTATCATGCACCTGCTTCTGGAAAACAACATGCAAGATTCTTACTGAGGAGGCAGATTATACCAAGTTTCACAGGCAGGATTTTCATGGGACAATTTGCCAAAACAAGGATGCACACAGCTGGGCATGTGGTGCGTTCAAGCCCTGTGCCAGGCCACATTGGTTTGAATGCAAAACACATGATCTCAGGCCACATCAGGAATAATAATCAGTTGCCTTTGCATGCAAAAAAAGTTGCTTTTTCTTCAGATGAAACTCTGCGCACCCAGACCTGGCCTTATAGGACATCACCAACTGGAACAACTACACATGGACCAGTAAAAAATTCAGAGATCTCAAGGGCACCAAAACAACATAAGATTACCAGCCAACCAGTAGCAAAACAACCATCACCAGCTACCGGAAAACCACCCACTCCTGAGGAGAAACAGCATGCTAAACCTCAACCTATTAGTAATGCTACTAATAAATCTAAACTTTCCCCAAGTTTAGATGCACCTTCAGCATCTGGTAATGTCAGGAATGTTAGAAATCCTCTTGTCCAAGTTGAAGCACGAGGAGGTGAGAGTATGATTGATGATGAACCAACGAATCATCAAGCAAACAGAAACTCTTTCTATAATCTGCTCCCGTATGGGAATACCAACAGATCTCCTCAGAGAGAAACAGGTCATGGTACAAGATATTTCCTTAATGGACTGCCTGATCTCATTCCTGATCCATACTATATCCAAGCAGCATCTTACATCCAAAGAGTGCAGATGTACACATTAAGATGTGCCGCAGAGGAGAACTGCCTTTCCAGTTCAGCGTACAGCTCGAGTGTGAGGGACCTTGATTACAGAGTGCTCCTCCGATTTCCTCAGAGAGTCAAAAATCAAGGCACAGCAGATTTTCTCCCTGTGAAACCACATTATGATTGGGAATGGCACAGCTGCCACCAGCATTATCACAGCATGGATGCCTTCAGCAATTATGACCTTCTGGACGCTGCTACGGGCAGAAAAGTGGCTGAGGGTCATAAAGCCAGTTTCTGTCTGGAAGACACCAGCTGTGATCCAGGAGTGAGGAGAAGATACGCCTGCACAGCTCACACACAGGGATTGGGCCCTGGTTGCTACGACACCTACCATGCTAACATCGACTGCCAATGGATTGATATAACAGATGTTTCTCTTGGAGATTATATTCTGAAGGCGAGTAACGGTAAACCCAGGTTTTCAAGTGCAGGAGTCAGACTTCTCCAATAACGTTGTTAGATGTGATATCCGATACACAGGATTGTACGTCCAAACAAACAACTGTAGGATCACCGGGt
>TCONS_00040043
ATgactaaatattcatttattttctgcttaTCCATACATTTatgtgttctggtgtttttaAATACTGCACAGAACCATGGAGCCTGGCAACACAAGGTTAAGTGGGAAACTAATGGGCAGGTTTACAGTTTACTGAGCGCCAGCTCTCAGTATCATGCACCTGCTTCTGGAAAACAACATGCAAGATTCTTACTGAGGAGGCAGATTATACCAAGTTTCACAGGCAGGATTTTCATGGGACAATTTGCCAAAACAAGGATGCACACAGCTGGGCATGTGGTGCGTTCAAGCCCTGTGCCAGGCCACATTGGTTTGAATGCAAAACACATGATCTCAGGCCACATCAGGAATAATAATCAGTTGCCTTTGCATGCAAAAAAAGTTGCTTTTTCTTCAGATGAAACTCTGCGCACCCAGACCTGGCCTTATAGGACATCACCAACTGGAACAACTACACATGGACCAGTAAAAAATTCAGAGATCTCAAGGGCACCAAAACAACATAAGATTACCAGCCAACCAGTAGCAAAACAACCATCACCAGCTACCGGAAAACCACCCACTCCTGAGGAGAAACAGCATGCTAAACCTCAACCTATTAGTAATGCTACTAATAAATCTAAACTTTCCCCAAGTTTAGATGCACCTTCAGCATCTGGTAATGTCAGGAATGTTAGAAATCCTCTTGTCCAAGTTGAAGCACGAGGAGGTGAGAGTATGATTGATGATGAACCAACGAATCATCAAGCAAACAGAAACTCTTTCTATAATCTGCTCCCGTATGGGAATACCAACAGATCTCCTCAGAGAGAAACAGGTCATGGTACAAGATATTTCCTTAATGGACTGCCTGATCTCATTCCTGATCCATACTATATCCAAGCAGCATCTTACATCCAAAGAGTGCAGATGTACACATTAAGATGTGCCGCAGAGGAGAACTGCCTTTCCAGTTCAGCGTACAGCTCGAGTGTGAGGGACCTTGATTACAGAGTGCTCCTCCGATTTCCTCAGAGAGTCAAAAATCAAGGCACAGCAGATTTTCTCCCTGTGAAACCACATTATGATTGGGAATGGCACAGCTGCCACCAGCATTATCACAGCATGGATGCCTTCAGCAATTATGACCTTCTGGACGCTGCTACGGGCAGAAAAGTGGCTGAGGGTCATAAAGCCAGTTTCTGTCTGGAAGACACCAGCTGTGATCCAGGAGTGAGGAGAAGATACGCCTGCACAGCTCACACACAGGGATTGGGCCCTGGTTGCTACGACACCTACCATGCTAACATCGACTGCCAATGGATTGATATAACAGATGTTTCTCTTGGAGATTATATTCTGAAGGTAACGGTAAACCCAGGTTTTCAAGTGCAGGAGTCAGACTTCTCCAATAACGTTGTTAGATGTGATATCCGATACACAGGATTGTACGTCCAAACAAACAACTGTAGGATCACCGGGtga
>TCONS_00040044
CCTGTGAAACCACATTATGATTGGGAATGGCACAGCTGCCACCAGCATTATCACAGCATGGATGCCTTCAGCAATTATGACCTTCTGGACGCTGCTACGGGCAGAAAAGTGGCTGAGGGTCATAAAGCCAGTTTCTGTCTGGAAGACACCAGCTGTGATCCAGGAGTGAGGAGAAGATACGCCTGCACAGCTCACACACAGGGATTGGGCCCTGGTTGCTACGACACCTACCATGCTAACATCGACTGCCAATGGATTGATATAACAGATGTTTCTCTTGGAGATTATATTCTGAAGGTAACGGTAAACCCAGGTTTTCAAGTGCAGGAGTCAGACTTCTCCAATAACGTTtttggtcACGCCTGGATTAGGCAttcttgttatttattttaaattatactaCGTGGGTTGTTGAATGTTTGATTCTGATGGGCTGATGAACATTTCAGATAAACGAACAGCCTGAAGGGGCATTGCAGTTTCATATCcctacgctgaatgatttcagttattttacatctacaagagtcaaa

Function

symbol description
loxl5a Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in notochord.

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0018057 peptidyl-lysine oxidation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-186 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in notochord.

Ensembl:

ensembl_id ENSDARG00000071680

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040042 False 1466 mRNA 0.44 6 5123479 5129506
TCONS_00040043 False 1464 mRNA 0.44 6 5123479 5129508
TCONS_00040044 True 533 processed_transcript 0.44 5 5125898 5130024

Neighbor

gene id symbol gene type direction distance location
XLOC_020083 NA coding upstream 922 5118313 ~ 5122557 (+)
XLOC_020082 NA coding upstream 6855 5102773 ~ 5116624 (+)
XLOC_020081 NA coding upstream 154320 4966441 ~ 4969159 (+)
XLOC_020080 si:ch1073-104i17.1 coding upstream 165717 4947923 ~ 4957762 (+)
XLOC_020079 cers4a coding upstream 390373 4707663 ~ 4733106 (+)
XLOC_020085 mydgf coding downstream 5169 5135193 ~ 5145469 (+)
XLOC_020086 cers1 coding downstream 46231 5176255 ~ 5232099 (+)
XLOC_020087 dre-mir-23a-1 coding downstream 163189 5293213 ~ 5293301 (+)
XLOC_020088 NA coding downstream 166068 5296092 ~ 5297076 (+)
XLOC_020089 dre-mir-27e coding downstream 169927 5299951 ~ 5300056 (+)
XLOC_020078 NA non-coding upstream 435760 4680238 ~ 4687719 (+)
XLOC_020077 CR751224.2 non-coding upstream 445498 4677867 ~ 4677981 (+)
XLOC_020090 mir24-4 non-coding downstream 177461 5307485 ~ 5307574 (+)
XLOC_020095 NA non-coding downstream 507861 5637885 ~ 5640683 (+)

Expression


Co-expression Network