XLOC_020080 (si:ch1073-104i17.1)


Basic Information

Item Value
gene id XLOC_020080
gene name si:ch1073-104i17.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4947923 ~ 4957762 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040033
CGACGTTGTCATGGTGAAAGTCGAGCGTCGCGTTCTCGTCAGATCCTAAAACGCGGTTTGTTATGGTTTTAAAGCGCTGCTTGCTCGGCTTTAACCGAGTCGGTGCTTTCTGATAGCACTTTAGGTGATGTTTACTAATTAATCAATATGTGGAGTCGCGGAGGACCACGGAGTTCAGCTTTGGACAGAGCTAAAGCTCAGCTCTCTGGACAGAGGATCTTAAACACTGCGGTTGTAAAGGACAAAAGAGATGAGAAAAACTTTGTGCAACCGTCCAGACAGACCCAATTCCAAGACCTCAGCGATGCATCCTCACCATCCCAGACTGAAAACCAGGACCCTGCGAGGAGTTTTCACTTGGGTGGTGGTAGTCGATTTCTGAAGAAGACCTCTAAAGGCACCACAATTGAGAGAACTTCTGCAGGAACGGACGAATCTAAAACCATACCTCAGCGTAGCTCACAAAGCGCCGCGTTAAGCAAACTAGCGCTCATCGAGAACCGCATCAGAAACCAGAAAATCACAAGCAACCATACAGAACCACAGGAAATACGTTTGTCCGTCCATTCCAGCAGCGATCTGAGCATGACGGGAAGTCGCTTTCTGAAGAAGAGCATTGTTTCTGAACCTCAGGAGCTGAAGTTTCCTGAGACGACGCCTGGTCTGAATGAACGTAGAGAAAGGAGAGTCAGTTTAGACAGCGACGAACAGGACATGAGAAGACTTATAGGAGACTCTTTCAGTTTATCAGAGAGTTCCTTGCTAAATGCAGCCAGGCAGAAGAGTCCTCAGGTAGCCAAAAAGGTAAACACGGGGAGCACTGGGAAATCGACTGTACCTTCAGCAGCTCCTGAAAAGCATCCAGTTATCAGTCATCAAAGTCTTTCCCCTTCCCCCAGAAGACCTGAATCACGTATGGTCCGCTTTACCGAACATTCGCTGTCTTCTGAAACAGATCACAGTGAGATTCATTCTTTGAATGATCTTTTTCCTGCTGCTCCAGCACATGATTCTGAAGACACTCTGAGCGAGATGAGTGCAGCATCTGATGATTTCAAACTGAACGTAATGACACTTGATGATTTAGCACCTATACCTTCTGAGGCagctgaaatctcacttgaaaaGAAAGAAACGCAAGCCAGAAAAGAAGACCGAATAAAGAAGTCTCCCGAGATCTCAAAAGTCGCTTTACAACCCGCACCGGAGGATGTCTACGAAAGCGATTTTGAGAGTGAAATCGCATCAGAG

Function

symbol description
si:ch1073-104i17.1 Orthologous to human C19orf44 (chromosome 19 open reading frame 44).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-443 Orthologous to human C19orf44 (chromosome 19 open reading frame 44).

Ensembl:

ensembl_id ENSDARG00000090673

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040033 True 1251 mRNA 0.47 5 4947923 4957762

Neighbor

gene id symbol gene type direction distance location
XLOC_020079 cers4a coding upstream 214817 4707663 ~ 4733106 (+)
XLOC_020078 NA coding upstream 260204 4680238 ~ 4687719 (+)
XLOC_020077 CR751224.2 coding upstream 269942 4677867 ~ 4677981 (+)
XLOC_020076 ctxn1 coding upstream 433266 4488454 ~ 4514657 (+)
XLOC_020075 timm44 coding upstream 481199 4447387 ~ 4466724 (+)
XLOC_020081 NA coding downstream 8679 4966441 ~ 4969159 (+)
XLOC_020082 NA coding downstream 145011 5102773 ~ 5116624 (+)
XLOC_020083 NA coding downstream 160551 5118313 ~ 5122557 (+)
XLOC_020084 loxl5a coding downstream 165717 5123479 ~ 5130024 (+)
XLOC_020085 mydgf coding downstream 177431 5135193 ~ 5145469 (+)
XLOC_020072 NA non-coding upstream 780813 4064601 ~ 4167110 (+)
XLOC_020073 NA non-coding upstream 862449 4083596 ~ 4085474 (+)
XLOC_020070 CABZ01031768.1 non-coding upstream 1187052 3760757 ~ 3760871 (+)
XLOC_020087 dre-mir-23a-1 non-coding downstream 335451 5293213 ~ 5293301 (+)
XLOC_020088 NA non-coding downstream 338330 5296092 ~ 5297076 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_11059372_11062362 NA coding CI01000030 null 11059280 ~ 11062577 (-)