XLOC_020085 (mydgf)


Basic Information

Item Value
gene id XLOC_020085
gene name mydgf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5135193 ~ 5145469 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040045
ATCCTATGAAGAACATACAGGAACAGTACAGGCACCTTTTTCATTCACTACATAAACGCAGATCTCCTGTCTGTAAAGCATCATGGCATTTATTGTGCACATGAAATGGTTTGTgaatcttctgctgctgtttgtTGTGCTTTGTGAACTGTGTTCTGCTGAAAGGACCAAAACACTGGACTTCGATGTCAAACCTGGAGGAGTTGTGCAGACTTTCTCTGCAAAACTTaagaagtataaatgcacctTCACATATGCATGCCAAGGAGGAACCAATGAGCAATGGCAAATGAGTGTCGGACTAAGTGACGATGAGCAAATGTTTTCCTGTTCAGTATGGAGGCCCCAAGGGAAGTCCTACTTGTTTTTTACGCAGTTCAAAGCCGAGATAAAAGGAGCCAAGATCGAGTACGCCACCGCATATTCCCAGACGGCCGTGGGTGGACAGAGGGATGTTGCTTTGAAAGAAGAAGAGTACATAGTGTCAGAGTCTGCAGTGACACAAAGAGATGGAAAATTCCATTCGGAGCTTTCTAAGCTCACTGTCATTGGTCGAATACGGCATGATGAACTCTGATTGGCCGATTCGAAGGACGTTGGTTATTTAACAGCTTTGGACACAATTATCTGCTCACGGTCACAAGTCAAGCGAAGGAAATCACAGCACTGGACGTTCTGAAAAATGAATTTACTGTGATAGAAAAGATTTCTTACAGATGCCAGTGGCCAAAGGTTGGAGTGATCATCTTAGAGAGGTAGACGAAAAGTCTGTTATTGGATATTATAAGGGGTAAAACAAATTGTACAtgcacatttttttcatatttgtaaGGTGTTATGAAGGCTTCTTTATATTCAGTGCAGAACAGCAGATTGATTTCTGTTCTTGTCAGAATTTATGGGTTTTCTAGGGTTACAGTCTGACTTTGATTCATACCTGCAAAGCTGATTATCAAGAGTGCTCATACTTACTTTCTTAGGCTGGTGTAAAGGCACGCTTGTAGACAATTCCCACTAAATCTTtggggtgtgtcagaatcctttgAGTATTTCTGTGGTGGAGGAAAAAACATCAAGATGGTTACTACAGTTCCTTTTGTCTCCCAGTCATGCTTTATTCTGATAACCGATGTATCGGAATTTGAATAAATCTGTTATCAGAACAATTTGACTTCTGGCCTTACTATTTGCTGACTTTGTATACCTAATATTTTTGCGTAAAGTAAGTGAATTGTGTCTGTTTGAAAGCAACAACCTCTGAGGGCTGTTTTTTTTGCACTCTTAAGGGTGCAAAATGTGTGTAATTCTGCTGCATAAAATTAAAACAAGCTACAAATTTGCTGATTCTGTTCAAGATTTGTCCAGTCAGCTCTTTGAAAGGCTTGTCGGTATCCCAACTGTGAATAAAAGAGCCTGCAATGCAATTCACAAGCTATTAAAGAAATTAATGTCTTGAGAACCAAAA
>TCONS_00040046
GGATCTTCGCGCGCTTTTAAGGTGGATGGACGTTAGCTTCCGAAAAGGACGaagtataaatgcacctTCACATATGCATGCCAAGGAGGAACCAATGAGCAATGGCAAATGAGTGTCGGACTAAGTGACGATGAGCAAATGTTTTCCTGTTCAGTATGGAGGCCCCAAGGGAAGTCCTACTTGTTTTTTACGCAGTTCAAAGCCGAGATAAAAGGAGCCAAGATCGAGTACGCCACCGCATATTCCCAGACGGCCGTGGGTGGACAGAGGGATGTTGCTTTGAAAGAAGAAGAGTACATAGTGTCAGAGTCTGCAGTGACACAAAGAGATGGAAAATTCCATTCGGAGCTTTCTAAGCTCACTGTCATTGGTCGAATACGGCATGATGAACTCTGATTGGCCGATTCGAAGGACGTTGGTTATTTAACAGCTTTGGACACAATTATCTGCTCACGGTCACAAGTCAAGCGAAGGAAATCACAGCACTGGACGTTCTGAAAAATGAATTTACTGTGATAGAAAA

Function

symbol description
mydgf Predicted to be involved in positive regulation of angiogenesis and positive regulation of endothelial cell proliferation. Predicted to be active in extracellular space. Orthologous to human MYDGF (myeloid derived growth factor).

GO:

id name namespace
GO:0045766 positive regulation of angiogenesis biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process
GO:0005615 extracellular space cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-183 Predicted to be involved in positive regulation of angiogenesis and positive regulation of endothelial cell proliferation. Predicted to be active in extracellular space. Orthologous to human MYDGF (myeloid derived growth factor).

Ensembl:

ensembl_id ENSDARG00000071679

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040045 False 1465 mRNA 0.40 6 5135193 5145469
TCONS_00040046 True 523 mRNA 0.46 6 5135884 5144708

Neighbor

gene id symbol gene type direction distance location
XLOC_020084 loxl5a coding upstream 5169 5123479 ~ 5130024 (+)
XLOC_020083 NA coding upstream 12636 5118313 ~ 5122557 (+)
XLOC_020082 NA coding upstream 18569 5102773 ~ 5116624 (+)
XLOC_020081 NA coding upstream 166034 4966441 ~ 4969159 (+)
XLOC_020080 si:ch1073-104i17.1 coding upstream 177431 4947923 ~ 4957762 (+)
XLOC_020086 cers1 coding downstream 30786 5176255 ~ 5232099 (+)
XLOC_020087 dre-mir-23a-1 coding downstream 147744 5293213 ~ 5293301 (+)
XLOC_020088 NA coding downstream 150623 5296092 ~ 5297076 (+)
XLOC_020089 dre-mir-27e coding downstream 154482 5299951 ~ 5300056 (+)
XLOC_020090 mir24-4 coding downstream 162016 5307485 ~ 5307574 (+)
XLOC_020078 NA non-coding upstream 447474 4680238 ~ 4687719 (+)
XLOC_020077 CR751224.2 non-coding upstream 457212 4677867 ~ 4677981 (+)
XLOC_020095 NA non-coding downstream 492416 5637885 ~ 5640683 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_10971452_10974167 MYDGF coding CI01000030 null 10970857 ~ 10974167 (-)