Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040041 |
| length | 741 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 5 |
| gene id | XLOC_020083 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 5118313 ~ 5122557 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0072686 | mitotic spindle | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0005819 | spindle | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005643 | nuclear pore | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| id | description |
|---|---|
| ko00230 | Purine metabolism |
| ko03230 | Viral genome structure |
| ko05164 | Influenza A |
| ko03200 | Viral proteins |
| id | description |
|---|---|
| ZDB-GENE-030404-1 | Predicted to enable ribosylnicotinamide kinase activity. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Is expressed in several structures, including immature eye; nervous system; neural plate; proliferative region; and ventral mesoderm. Orthologous to human NMRK2 (nicotinamide riboside kinase 2). |
| ensembl_id | ENSDART00000169200 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00040038 | lncRNA | upstream | 85 | 5118378 ~ 5119948 (+) | False | XLOC_020083 |
| TCONS_00042024 | lncRNA | upstream | 16216 | 5102773 ~ 5103817 (+) | False | XLOC_020082 |
| TCONS_00041864 | lncRNA | upstream | 150874 | 4966441 ~ 4969159 (+) | True | XLOC_020081 |
| TCONS_00041863 | lncRNA | upstream | 432314 | 4680238 ~ 4687719 (+) | True | XLOC_020078 |
| TCONS_00041862 | lncRNA | upstream | 966252 | 4148883 ~ 4153781 (+) | True | XLOC_020072 |
| TCONS_00042026 | lncRNA | downstream | 174057 | 5296092 ~ 5297076 (+) | True | XLOC_020088 |
| TCONS_00041866 | lncRNA | downstream | 515850 | 5637885 ~ 5640683 (+) | True | XLOC_020095 |
| TCONS_00042027 | lncRNA | downstream | 684816 | 5806851 ~ 5825209 (+) | True | XLOC_020100 |
| TCONS_00042028 | lncRNA | downstream | 786659 | 5908694 ~ 5923242 (+) | True | XLOC_020104 |
| TCONS_00042029 | lncRNA | downstream | 799933 | 5921968 ~ 5939401 (+) | True | XLOC_020105 |
| TCONS_00040035 | mRNA | upstream | 3409 | 5106751 ~ 5116624 (+) | True | XLOC_020082 |
| TCONS_00040034 | mRNA | upstream | 4396 | 5103349 ~ 5115637 (+) | False | XLOC_020082 |
| TCONS_00040033 | mRNA | upstream | 162271 | 4947923 ~ 4957762 (+) | True | XLOC_020080 |
| TCONS_00040032 | mRNA | upstream | 386927 | 4707663 ~ 4733106 (+) | True | XLOC_020079 |
| TCONS_00040030 | mRNA | upstream | 605600 | 4513607 ~ 4514433 (+) | True | XLOC_020076 |
| TCONS_00040042 | mRNA | downstream | 1444 | 5123479 ~ 5129506 (+) | False | XLOC_020084 |
| TCONS_00040043 | mRNA | downstream | 1444 | 5123479 ~ 5129508 (+) | False | XLOC_020084 |
| TCONS_00040045 | mRNA | downstream | 13158 | 5135193 ~ 5145469 (+) | False | XLOC_020085 |
| TCONS_00040046 | mRNA | downstream | 13849 | 5135884 ~ 5144708 (+) | True | XLOC_020085 |
| TCONS_00040047 | mRNA | downstream | 54220 | 5176255 ~ 5232099 (+) | False | XLOC_020086 |
| TCONS_00040031 | other | upstream | 442052 | 4677867 ~ 4677981 (+) | True | XLOC_020077 |
| TCONS_00040022 | other | upstream | 1359162 | 3760757 ~ 3760871 (+) | True | XLOC_020070 |
| TCONS_00040021 | other | upstream | 1732029 | 3384732 ~ 3388004 (+) | True | XLOC_020069 |
| TCONS_00040020 | other | upstream | 1743763 | 3375262 ~ 3376270 (+) | True | XLOC_020068 |
| TCONS_00040015 | other | upstream | 1887399 | 3231612 ~ 3232634 (+) | True | XLOC_020062 |
| TCONS_00040044 | other | downstream | 3863 | 5125898 ~ 5130024 (+) | True | XLOC_020084 |
| TCONS_00040049 | other | downstream | 171178 | 5293213 ~ 5293301 (+) | True | XLOC_020087 |
| TCONS_00040050 | other | downstream | 177916 | 5299951 ~ 5300056 (+) | True | XLOC_020089 |
| TCONS_00040051 | other | downstream | 185450 | 5307485 ~ 5307574 (+) | True | XLOC_020090 |
| TCONS_00040065 | other | downstream | 688842 | 5810877 ~ 5812454 (+) | True | XLOC_020101 |
