RNA id: TCONS_00040049


Basic Information

Item Value
RNA id TCONS_00040049
length 89
RNA type miRNA
GC content 0.53
exon number 1
gene id XLOC_020087
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5293213 ~ 5293301 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTGGCGGGGAGGGTTCCTGGCACCGTGATTTGGTggataaacagaaatgaaaatcACATTGCCAGGGATTTCCACTCCTGCACGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000115972

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041865 lncRNA upstream 170657 5118313 ~ 5122556 (+) False XLOC_020083
TCONS_00042025 lncRNA upstream 170657 5118378 ~ 5122556 (+) False XLOC_020083
TCONS_00040040 lncRNA upstream 171415 5119733 ~ 5121798 (+) False XLOC_020083
TCONS_00040038 lncRNA upstream 173265 5118378 ~ 5119948 (+) False XLOC_020083
TCONS_00042024 lncRNA upstream 189396 5102773 ~ 5103817 (+) False XLOC_020082
TCONS_00042026 lncRNA downstream 2791 5296092 ~ 5297076 (+) True XLOC_020088
TCONS_00041866 lncRNA downstream 344584 5637885 ~ 5640683 (+) True XLOC_020095
TCONS_00042027 lncRNA downstream 513550 5806851 ~ 5825209 (+) True XLOC_020100
TCONS_00042028 lncRNA downstream 615393 5908694 ~ 5923242 (+) True XLOC_020104
TCONS_00042029 lncRNA downstream 628667 5921968 ~ 5939401 (+) True XLOC_020105
TCONS_00040047 mRNA upstream 61114 5176255 ~ 5232099 (+) False XLOC_020086
TCONS_00040048 mRNA upstream 78362 5176693 ~ 5214851 (+) True XLOC_020086
TCONS_00040045 mRNA upstream 147744 5135193 ~ 5145469 (+) False XLOC_020085
TCONS_00040046 mRNA upstream 148505 5135884 ~ 5144708 (+) True XLOC_020085
TCONS_00040043 mRNA upstream 163705 5123479 ~ 5129508 (+) False XLOC_020084
TCONS_00040052 mRNA downstream 38374 5331675 ~ 5428243 (+) False XLOC_020091
TCONS_00040053 mRNA downstream 38431 5331732 ~ 5358940 (+) True XLOC_020091
TCONS_00040054 mRNA downstream 185052 5478353 ~ 5479326 (+) True XLOC_020092
TCONS_00040055 mRNA downstream 238702 5532003 ~ 5568610 (+) True XLOC_020093
TCONS_00040056 mRNA downstream 281651 5574952 ~ 5587976 (+) True XLOC_020094
TCONS_00040044 other upstream 163189 5125898 ~ 5130024 (+) True XLOC_020084
TCONS_00040031 other upstream 615232 4677867 ~ 4677981 (+) True XLOC_020077
TCONS_00040022 other upstream 1532342 3760757 ~ 3760871 (+) True XLOC_020070
TCONS_00040021 other upstream 1905209 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040020 other upstream 1916943 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040050 other downstream 6650 5299951 ~ 5300056 (+) True XLOC_020089
TCONS_00040051 other downstream 14184 5307485 ~ 5307574 (+) True XLOC_020090
TCONS_00040065 other downstream 517576 5810877 ~ 5812454 (+) True XLOC_020101
TCONS_00040079 other downstream 996933 6290234 ~ 6290350 (+) True XLOC_020115
TCONS_00040089 other downstream 1278546 6571847 ~ 6576940 (+) True XLOC_020123

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU186061 True 2124 lncRNA 0.40 2 CI01000030 10871354 ~ 10879099 (-)
striped catfish (Pangasianodon hypophthalmus) TU186061 True 235 lncRNA 0.35 2 NC_047604.1 755176 ~ 755774 (+)