RNA id: TCONS_00040031


Basic Information

Item Value
RNA id TCONS_00040031
length 115
RNA type rRNA
GC content 0.54
exon number 1
gene id XLOC_020077
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4677867 ~ 4677981 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

accagcagctagctctctgcatctctcacatggtcacacattgaagctaagcagggctgagcctggtccgTACCTGgaagggagaccacatgggaaagctaggttgctgctgaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000183751

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042023 lncRNA upstream 510757 4064601 ~ 4167110 (+) False XLOC_020072
TCONS_00041862 lncRNA upstream 524086 4148883 ~ 4153781 (+) True XLOC_020072
TCONS_00042022 lncRNA upstream 578268 4064601 ~ 4099599 (+) False XLOC_020072
TCONS_00041861 lncRNA upstream 592393 4083596 ~ 4085474 (+) True XLOC_020073
TCONS_00042020 lncRNA upstream 1341986 3329052 ~ 3335881 (+) False XLOC_020067
TCONS_00041863 lncRNA downstream 2257 4680238 ~ 4687719 (+) True XLOC_020078
TCONS_00041864 lncRNA downstream 288460 4966441 ~ 4969159 (+) True XLOC_020081
TCONS_00042024 lncRNA downstream 424792 5102773 ~ 5103817 (+) False XLOC_020082
TCONS_00041865 lncRNA downstream 440332 5118313 ~ 5122556 (+) False XLOC_020083
TCONS_00040038 lncRNA downstream 440397 5118378 ~ 5119948 (+) False XLOC_020083
TCONS_00040029 mRNA upstream 163210 4488454 ~ 4514657 (+) False XLOC_020076
TCONS_00040030 mRNA upstream 163434 4513607 ~ 4514433 (+) True XLOC_020076
TCONS_00040027 mRNA upstream 211143 4447387 ~ 4466724 (+) False XLOC_020075
TCONS_00040028 mRNA upstream 214379 4447431 ~ 4463488 (+) True XLOC_020075
TCONS_00040025 mRNA upstream 232034 4442473 ~ 4445833 (+) False XLOC_020074
TCONS_00040032 mRNA downstream 29682 4707663 ~ 4733106 (+) True XLOC_020079
TCONS_00040033 mRNA downstream 269942 4947923 ~ 4957762 (+) True XLOC_020080
TCONS_00040034 mRNA downstream 425368 5103349 ~ 5115637 (+) False XLOC_020082
TCONS_00040035 mRNA downstream 428770 5106751 ~ 5116624 (+) True XLOC_020082
TCONS_00040036 mRNA downstream 440380 5118361 ~ 5122557 (+) False XLOC_020083
TCONS_00040022 other upstream 916996 3760757 ~ 3760871 (+) True XLOC_020070
TCONS_00040021 other upstream 1289863 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040020 other upstream 1301597 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040015 other upstream 1445233 3231612 ~ 3232634 (+) True XLOC_020062
TCONS_00039978 other upstream 2046129 2631618 ~ 2631738 (+) True XLOC_020038
TCONS_00040044 other downstream 447917 5125898 ~ 5130024 (+) True XLOC_020084
TCONS_00040049 other downstream 615232 5293213 ~ 5293301 (+) True XLOC_020087
TCONS_00040050 other downstream 621970 5299951 ~ 5300056 (+) True XLOC_020089
TCONS_00040051 other downstream 629504 5307485 ~ 5307574 (+) True XLOC_020090
TCONS_00040065 other downstream 1132896 5810877 ~ 5812454 (+) True XLOC_020101