RNA id: TCONS_00040028


Basic Information

Item Value
RNA id TCONS_00040028
length 2040
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_020075
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4447387 ~ 4466724 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTCACTCGCGGCGCTTCCAAGATGGCGGCCTCCTTGTGTCAGTGTTACCAGctgtgTGTAAGGAGAAGCTCCGCGCTGGTCTTGTCTGGTCATTACTCCTCGCTGTACCCCAGAGCTCATGTCTTCAGGATATGTGGAGCTCCGGCCGCCGCCGCAGCACAGgTCAGGTTTATGTCCAGCGGTGGCGGCAGGAAGGGTTTTCTGGGAGAGTTTCTGGATAATCTGAAGCAGGAACTGAGCAAGAACAAAGAGATGAAGGAGAACATCAAGAAGTTTCGAGAGGAGGCCAAAAAACTGGAGGAATCTGAAGCCCTCAAACAGGCCAGGAGGAAATATaaAACCATCGAGTCTGAAACGGTGAAAACGTCGGAAGTGTTGAAGAAAACTCTCGGCTCTCTGTCAGATACGGTGAAAGAGGGTTTGGAAGAAGTCGGACGAACAGACATCGGGAAGAAAATCAAAGAAGGAGTCGAGGAAGCGGCTAAATCGGCTAAACAGTCTGCAGAGACGGTGACAAAAGGAGGAGAGAAACTGGGGAAGACTGGAGCGTTTCGCGCTATTTCACAGGGTGTTGAGAGTGTGAAGAAGGAGATTGGAGACCTGGGTCAGATGGGTCCGTATCGGCCGCCCAGCAGACTCAGAAAGAGGACAGAGTTCTCATCCAAAGCCGGAGCAGCAGAAGACAAAGTGTTTGAGGCCAATGAGGAGGCGATGGGTGTTGTGCTACACAAGGACTCCAAATGGTATCAGCAGTGGAAAGACTTCAAGGACAACAATGTAGTTTTcaacaGATTCTTCGAGATGAAGATGAAGTACGATGAGAGCGACAACGCCTTCATCAGAGCGTCACGAGCCGTCACCGACAAAATGACAGACATCATCGgCGGTCTGTTCTCTAAAACGGAGATGTCTGAAGTTCTGACTGAGATCCTGAAGGTGGACCCGAGCTTCGACAAGGACTCTTTCCTGAAGCAGTGCGAGAAAGACATCATTCCCAACATCCTGGAGGCCATGATTCAGGGGGAGCTGGATGTGCTGAAGGACTGGTGCTACGAGGCTacgTACAGTCAGCTGGCTCATCCAATCCAACAGGCCAAAGCGATGGGGCTTCAGTTTCACTCCAAGATCCTGGACATTGATAATATTGACctCGCGATGGGGAAAATGATGGAGCAGGGTCCGGTTCTCATCATCACCTTCCAGGCTCAGTTAGTGATGGTGATCCGCAATGTAAAGGGTGAAGTGGTCGAGGGAGACCCGGACAAAGTGTTGAGGATGATGTATGTTTGGGCTCTGTGTCGGGATCAGGAAGAACTGAACCCTAACGCCGCCTGGAGACTCCTGGACATTTCCGCTTCCAGCACTGAGCAGATACTTTAAGTACTGCCTCTTTAAGACCACAATAAAGGGGAGGGCGTGGCTCAACTGAGGGGGCGTGACCACACACATCAGTTTCTTTTACATAACCCCGCCCCCATTGGTTTCTTCCAGAGCTCTTCCAGGAACCCTGACTAGACTGCAGGTTTGCTCTTGTTGAGCCAAAATGGCCGCCGGTTGGACTCACGCCATTGGACGGATACTTAACTGTCGAAAAGACTAaaagactttttttgtttgtaccATCTGTCCAGAAGGATTACGTAACGTTGAGTGGTTATCAAGTGCCAGTCTGCTAAATTTATCAGTAACatgtttaataatgattataaCAGATGCAATTTCTATTAAATCCCCTTAAATCGAGATACAATCTGGAGTTGCTGCAGGCCGTCAGTGTGTctatatttattaaagatttgCTCCCGTTTCATCGGGTTGTGTAGTTTTATCAATGACGGATTGTATCTTTGATGTTTGAGAGAGTTCAGCAGattgttagtttatttttattcattcacgtCTCTGTTATTTGGGGCTAAAAATAGCCAAAATGGCTCCCTCTACATTAAATTGAGCTGGTTGATTGTAGACCTGGATTATCCGAAAacgtgaaatgtaaaataaatttattccATGCTTCATTATTCACAACGAATAA

Function

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0015031 protein transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-145 Predicted to enable chaperone binding activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport. Predicted to be located in membrane and mitochondrion. Predicted to be active in mitochondrial inner membrane. Orthologous to human TIMM44 (translocase of inner mitochondrial membrane 44).

Ensembl:

ensembl_id ENSDART00000166768

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042023 lncRNA upstream 280321 4064601 ~ 4167110 (+) False XLOC_020072
TCONS_00041862 lncRNA upstream 293650 4148883 ~ 4153781 (+) True XLOC_020072
TCONS_00042022 lncRNA upstream 347832 4064601 ~ 4099599 (+) False XLOC_020072
TCONS_00041861 lncRNA upstream 361957 4083596 ~ 4085474 (+) True XLOC_020073
TCONS_00042020 lncRNA upstream 1111550 3329052 ~ 3335881 (+) False XLOC_020067
TCONS_00041863 lncRNA downstream 216750 4680238 ~ 4687719 (+) True XLOC_020078
TCONS_00041864 lncRNA downstream 502953 4966441 ~ 4969159 (+) True XLOC_020081
TCONS_00042024 lncRNA downstream 639285 5102773 ~ 5103817 (+) False XLOC_020082
TCONS_00041865 lncRNA downstream 654825 5118313 ~ 5122556 (+) False XLOC_020083
TCONS_00040038 lncRNA downstream 654890 5118378 ~ 5119948 (+) False XLOC_020083
TCONS_00040025 mRNA upstream 1598 4442473 ~ 4445833 (+) False XLOC_020074
TCONS_00040026 mRNA upstream 1796 4443689 ~ 4445635 (+) True XLOC_020074
TCONS_00040024 mRNA upstream 518356 3914318 ~ 3929075 (+) False XLOC_020071
TCONS_00040023 mRNA upstream 518356 3914318 ~ 3929075 (+) True XLOC_020071
TCONS_00040019 mRNA upstream 1119190 3303671 ~ 3328241 (+) True XLOC_020066
TCONS_00040029 mRNA downstream 24966 4488454 ~ 4514657 (+) False XLOC_020076
TCONS_00040030 mRNA downstream 50119 4513607 ~ 4514433 (+) True XLOC_020076
TCONS_00040032 mRNA downstream 244175 4707663 ~ 4733106 (+) True XLOC_020079
TCONS_00040033 mRNA downstream 484435 4947923 ~ 4957762 (+) True XLOC_020080
TCONS_00040034 mRNA downstream 639861 5103349 ~ 5115637 (+) False XLOC_020082
TCONS_00040022 other upstream 686560 3760757 ~ 3760871 (+) True XLOC_020070
TCONS_00040021 other upstream 1059427 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040020 other upstream 1071161 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040015 other upstream 1214797 3231612 ~ 3232634 (+) True XLOC_020062
TCONS_00039978 other upstream 1815693 2631618 ~ 2631738 (+) True XLOC_020038
TCONS_00040031 other downstream 214379 4677867 ~ 4677981 (+) True XLOC_020077
TCONS_00040044 other downstream 662410 5125898 ~ 5130024 (+) True XLOC_020084
TCONS_00040049 other downstream 829725 5293213 ~ 5293301 (+) True XLOC_020087
TCONS_00040050 other downstream 836463 5299951 ~ 5300056 (+) True XLOC_020089
TCONS_00040051 other downstream 843997 5307485 ~ 5307574 (+) True XLOC_020090

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_11529223_11536609.mRNA True 1919 mRNA 0.51 13 CI01000030 11528761 ~ 11536609 (-)
bowfin (Amia calva) AMCG00005937 True 3264 mRNA 0.53 13 CM030142.1 12872911 ~ 12880597 (-)