RNA id: TCONS_00040019


Basic Information

Item Value
RNA id TCONS_00040019
length 1754
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_020066
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3303671 ~ 3328241 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGACAGATGGCGGgcagctcctcctcctcttcttcttcttcaggtGTCGTCTGCTCTCCAGTGTCGGTGTGCAGGTGTCAGGTGTCCTCCGGCAGCGCTCGGCCGTGTCCTGTTGCCGGGAGACGCTCATCTTTAATTGAGGCCGGCAGACGTGATGGACGCTCAGAtgcagcaggactcccagaaccTCCAGCCCATGCAGAACGGAGAGGCCATGAGCCCCGGCCCGCAGGACTCCACGGGTCCCCCAGGGGACGAGGAGAGCCAGAGCACTGTCCCGTCCGCCCCGCCGCTGCCGCCGGACGCCGCGCCCTGCCCCAGGCCCAAACTGGTGTTTCACACGCAGCTGGCGCACGGCAGCCCGACCGGACGCATCCACGGCTTCACCAACGTCAGGGAGCTCTACGCCAAAATAGCAGAGGTCTTCAACATCTCACCCTCTGAGATCCTCTTCTGCACACTGAACTCGCATAAAGTGGACATGCAGAAGCTTCTGGGCGGTCAGATCGGCCTGGAGGACTTCATCTTTGCGCATGTGCGGGGAGAAACCAAAGAGGTGGAGGTCATTAAAACAGAAGATGCCCTCGGTTTGACCATTACCGACAACGGCGCGGGATACGCCTTCATTAAAAGAATAAAGGAGGGCAGCACCATTGACAGGATAAAGTCGGTGTGTGTCGGAGATCACATCGAGGCCATCAATGACCAGAGCATTGTGGGATGTCGACATTATGAAGTGGCTAAAATGCTGAAGGAGCAGCCGAGAGGAACCCCATTCACCCTGCGCCTAGTGGAGCCCAAAAAAGCCTTCGACATGATCGGTCAGAGGACTCGGGCCCCTAAGTCCAGCGAGGGGAAGCTGTCGAGCGGCAAAGAAACTCTCCGCCTGCGAACTCGAGGATCAGCTTCACTGGAGGAGATTCCCAGTGAACTGGAGGACGCCGCCATCCGCAAGGTGGACGATCTGCTGGAGAGTTACATGGGCATCAGAGACCTGGAGCTCGCGACGACTATAGTGGAGGCCGGGAAGAACAAGAAAAACCCAGATGATTTCGCCGAGGCTCTCGACTCAGTTCTGGGAGATTTCGGCTTTCCGGATGTTTTTCTGTTCGATGTTTGGGGCGCTTTGGGCGACGTCAAGAATGGACGCCTTTAAAGACATCATTCGGCTTGATTTACAACATCTGTCTTCTGTTTTCATACACACAATCCTCCCAATTCCCACGATGGTCCTGAGGAATGGAGAACGTCAAGGTATTAGCTGCTAATCTACAGGCTAACGCTAACATTCCAGTGTAAGATGCATTTAAACAAGGTCAAACTGCATTCTCCAGCAATGTTTATAGCTAGCTGAGGTCTTTTACATAAACTTTTACTAGTCTTTTACATAATTACTCTGACTATGATTAAAGTATGAGATAGCTTAGCCTAGCCTAGCCTAGCCTTTGTTTGTTTTGCCGTTGTTTGTGTTATGTATAAATAAACCGTGTTACAGGTGAAATGAACGATCGTTAATGATTAATGACAGATCTTGTGACACAAATGCCTTGTTTGTATATAAATGAATCCTTGCATATTGACAGAGTTAAATCAAATGTACACATATCTGATGTGTATTTAGCTTAAACATCTGTTGAAAGTGTTTGTGTATTGTATATCCTGTTTTACAAAGCACATACTCCTTTTTTGATGACCTGATGTGACATATTTGAACATGTATGAAGATTAAAAATGCTCTGGGTTACCACAAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-060616-326 Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 15. Orthologous to human GIPC3 (GIPC PDZ domain containing family member 3).

Ensembl:

ensembl_id ENSDART00000075049

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041860 lncRNA upstream 81254 3219003 ~ 3222417 (+) True XLOC_020061
TCONS_00041859 lncRNA upstream 193158 3110036 ~ 3110513 (+) True XLOC_020058
TCONS_00042019 lncRNA upstream 376055 2922151 ~ 2927616 (+) True XLOC_020054
TCONS_00042018 lncRNA upstream 475815 2814463 ~ 2827856 (+) True XLOC_020050
TCONS_00042017 lncRNA upstream 510110 2792575 ~ 2793561 (+) False XLOC_020048
TCONS_00042020 lncRNA downstream 811 3329052 ~ 3335881 (+) False XLOC_020067
TCONS_00042021 lncRNA downstream 5262 3333503 ~ 3335881 (+) True XLOC_020067
TCONS_00042022 lncRNA downstream 736360 4064601 ~ 4099599 (+) False XLOC_020072
TCONS_00042023 lncRNA downstream 736360 4064601 ~ 4167110 (+) False XLOC_020072
TCONS_00041861 lncRNA downstream 755355 4083596 ~ 4085474 (+) True XLOC_020073
TCONS_00040018 mRNA upstream 31964 3244950 ~ 3271707 (+) True XLOC_020065
TCONS_00040017 mRNA upstream 63837 3238474 ~ 3239834 (+) True XLOC_020064
TCONS_00040016 mRNA upstream 69177 3232925 ~ 3234494 (+) True XLOC_020063
TCONS_00040014 mRNA upstream 71279 3223489 ~ 3232392 (+) False XLOC_020062
TCONS_00040012 mRNA upstream 89127 3184500 ~ 3214544 (+) False XLOC_020060
TCONS_00040024 mRNA downstream 586077 3914318 ~ 3929075 (+) False XLOC_020071
TCONS_00040023 mRNA downstream 586077 3914318 ~ 3929075 (+) True XLOC_020071
TCONS_00040025 mRNA downstream 1114232 4442473 ~ 4445833 (+) False XLOC_020074
TCONS_00040026 mRNA downstream 1115448 4443689 ~ 4445635 (+) True XLOC_020074
TCONS_00040027 mRNA downstream 1119146 4447387 ~ 4466724 (+) False XLOC_020075
TCONS_00040015 other upstream 71037 3231612 ~ 3232634 (+) True XLOC_020062
TCONS_00039978 other upstream 671933 2631618 ~ 2631738 (+) True XLOC_020038
TCONS_00039952 other upstream 914420 2385384 ~ 2389251 (+) True XLOC_020009
TCONS_00039951 other upstream 917704 2384327 ~ 2385967 (+) False XLOC_020009
TCONS_00039942 other upstream 967642 2328299 ~ 2336029 (+) False XLOC_020009
TCONS_00040020 other downstream 47021 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040021 other downstream 56491 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040022 other downstream 432516 3760757 ~ 3760871 (+) True XLOC_020070
TCONS_00040031 other downstream 1349626 4677867 ~ 4677981 (+) True XLOC_020077
TCONS_00040044 other downstream 1797657 5125898 ~ 5130024 (+) True XLOC_020084

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000031_00460534_00468371.mRNA True 1504 mRNA 0.52 8 CI01000031 460420 ~ 468371 (-)