RNA id: TCONS_00040027


Basic Information

Item Value
RNA id TCONS_00040027
length 5627
RNA type mRNA
GC content 0.40
exon number 13
gene id XLOC_020075
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4447387 ~ 4466724 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGCTCCTCCCCCGGAATTGCGTCGCAAGGTCAACCAGCCAAACAGGTCACTCGCGGCGCTTCCAAGATGGCGGCCTCCTTGTGTCAGTGTTACCAGGTGAGTTTCTGATATAAAGCGTTTATTAAACGCTCATCAGCAGCGCGTTTAGGGTAAAGGCGAAAAACACGATGCTCGCGACCCAAGCCCCGCGAGCGCGCTGTTTGTTTGGCGGGAGCGCGCGTGTCTAATGCAGAAATGTGCATAGATGGATCAGTCATGCTGATGAAACCAGAATCTGGCCTTAatgaaatatcaaatattataacAAGCCTTTACAAGTGCCAGAGCTCATGTGGAAATCACTAAAAAACGCGAAGCAGATGTTGATTAATTCGTTGAATCCgtttaacaacaaaatatcaTGctgtgTGTAAGGAGAAGCTCCGCGCTGGTCTTGTCTGGTCATTACTCCTCGCTGTACCCCAGAGCTCATGTCTTCAGGATATGTGGAGCTCCGGCCGCCGCCGCAGCACAGgTCAGGTTTATGTCCAGCGGTGGCGGCAGGAAGGGTTTTCTGGGAGAGTTTCTGGATAATCTGAAGCAGGAACTGAGCAAGAACAAAGAGATGAAGGAGAACATCAAGAAGTTTCGAGAGGAGGCCAAAAAACTGGAGGAATCTGAAGCCCTCAAACAGGCCAGGAGGAAATATaaAACCATCGAGTCTGAAACGGTGAAAACGTCGGAAGTGTTGAAGAAAACTCTCGGCTCTCTGTCAGATACGGTGAAAGAGGGTTTGGAAGAAGTCGGACGAACAGACATCGGGAAGAAAATCAAAGAAGGAGTCGAGGAAGCGGCTAAATCGGCTAAACAGTCTGCAGAGACGGTGACAAAAGGAGGAGAGAAACTGGGGAAGACTGGAGCGTTTCGCGCTATTTCACAGGGTGTTGAGAGTGTGAAGAAGGAGATTGGAGACCTGGGTCAGATGGGTCCGTATCGGCCGCCCAGCAGACTCAGAAAGAGGACAGAGTTCTCATCCAAAGCCGGAGCAGCAGAAGACAAAGTGTTTGAGGCCAATGAGGAGGCGATGGGTGTTGTGCTACACAAGGACTCCAAATGGTATCAGCAGTGGAAAGACTTCAAGGACAACAATGTAGTTTTcaacaGATTCTTCGAGATGAAGATGAAGTACGATGAGAGCGACAACGCCTTCATCAGAGCGTCACGAGCCGTCACCGACAAAATGACAGACATCATCGgCGGTCTGTTCTCTAAAACGGAGATGTCTGAAGTTCTGACTGAGATCCTGAAGGTGGACCCGAGCTTCGACAAGGACTCTTTCCTGAAGCAGTGCGAGAAAGACATCATTCCCAACATCCTGGAGGCCATGATTCAGGGGGAGCTGGATGTGCTGAAGGACTGGTGCTACGAGGCTacgTACAGTCAGCTGGCTCATCCAATCCAACAGGCCAAAGCGATGGGGCTTCAGTTTCACTCCAAGATCCTGGACATTGATAATATTGACctCGCGATGGGGAAAATGATGGAGCAGGGTCCGGTTCTCATCATCACCTTCCAGGCTCAGTTAGTGATGGTGATCCGCAATGTAAAGGGTGAAGTGGTCGAGGGAGACCCGGACAAAGTGTTGAGGATGATGTATGTTTGGGCTCTGTGTCGGGATCAGGAAGAACTGAACCCTAACGCCGCCTGGAGACTCCTGGACATTTCCGCTTCCAGCACTGAGCAGATACTTTAAGTACTGCCTCTTTAAGACCACAATAAAGGGGAGGGCGTGGCTCAACTGAGGGGGCGTGACCACACACATCAGTTTCTTTTACATAACCCCGCCCCCATTGGTTTCTTCCAGAGCTCTTCCAGGAACCCTGACTAGACTGCAGGTTTGCTCTTGTTGAGCCAAAATGGCCGCCGGTTGGACTCACGCCATTGGACGGATACTTAACTGTCGAAAAGACTAaaagactttttttgtttgtaccATCTGTCCAGAAGGATTACGTAACGTTGAGTGGTTATCAAGTGCCAGTCTGCTAAATTTATCAGTAACatgtttaataatgattataaCAGATGCAATTTCTATTAAATCCCCTTAAATCGAGATACAATCTGGAGTTGCTGCAGGCCGTCAGTGTGTctatatttattaaagatttgCTCCCGTTTCATCGGGTTGTGTAGTTTTATCAATGACGGATTGTATCTTTGATGTTTGAGAGAGTTCAGCAGattgttagtttatttttattcattcacgtCTCTGTTATTTGGGGCTAAAAATAGCCAAAATGGCTCCCTCTACATTAAATTGAGCTGGTTGATTGTAGACCTGGATTATCCGAAAacgtgaaatgtaaaataaatttattccATGCTTCATTATTCACAACGAATAATGTGTTGATTTTGATTTTTTACTTTGTTAGCTAGACAACAATAGCTAGGTTACTCTTTAAAAAGGAGATTGCAACATAGTTAATCCACAAACTATTTATTGCACAGCTACTTAGTTTAAATATACTAGTTTAAAGGGAAAACTTAGTTGCTTATTCTAAAAAGCAGACAAAAACGAGCTagctaactaaaataaataatggctAATCTTTTATGATCGATGAAAGCTACAGCGAGGAAGGTACAAATACTAGCAAAAACTAACCAAATCATATTAGGATACATAGTTCAAAACTAGCTAACATAGCTACTGGAAAAAATAGCTAACTGCAATTGTTACTAGTAAAAAAAACTAGCTAATAGCTACTATCAGAAGTAGCTAACTGGAATAAAGGTGCATAGCTAAAAACTAGCAAACAGCTGCTAGCAAAAACTTAATGGAGGTACAATGCTAAAATAAATAGTATTGAAGGTACATGGCTAGGCTACCAGTGGACACTAGCCAACTCTTAATAATGTACTAAAATATGTAAATAGTAAAATCTTGCTAGCAGCAAAGAAGGTATATGGCTAAAAACTAGCAAACAAAGTTGCTAGTAATAAAAATCTAGCTAACTGCAATATCTGCTAGCAAAAGTAGCAAGTAATGAAGGTATAATGCTAAAGAATAACATGGCTAGGCTATAAGCAGAAACTATCGAATAAAGGCACATAGCTAAAAACTAGCGAACAAAGCTGCTAGTAATAAAAAATCTAGCTAACTGCAATATCTACTAGCAAAAGCAGCTACAAGATAAATATACTAGCAGAAACTATCCAACACTTATCAAATTACTAAAAATAGGTACAAAGCTACTAGTGAAATCTTGCTAAAAGCATAAAGGCACACAGCTAAAAACTAGCAAACAAATCTGCTAGTAATAAAAATCTAGTTTAAGTGCATTATCTGCTAGAAAAAGTAGCTAGCAATAAAGGTACATTGCTAAAACGTAGTATTTATGGTACATGGCTAGGCTACTAGCAGATACTATCCAACTCTCAttgatttaaaaaactaaaatgggTACATAGCTACTAGTAAAACCTTAACAACAGCACTACAAGCGAACTAGCGAACAAATCCACAAATGATAAAAATCTAGTTAAGTGCAATATCTTCTAGCAAAAGTAGCTAACAATGAAGGTACAAGCTAAAAATAGTATTGAAAGTATATGGCTAGGCTACTAGCAGAACCTATCGAACTTATTAACGTAGCCTACACAGCTAAAAGTAGGTACATAGCTACAAATGAACTCTTGCTAACTAGCTAACTCAAGTGAAGCTGCTAACAATAACTAGCAAACTTATAAAAGTATATGATAGCTAACTGCTATAAGCTGTATAGTTTTAGCTTGTAAACAGTTGTGAGTGTAGCTAACAACTGTTTAAAAGggtagctggttttagctgctaTTTACACTTGCATAATTCTGTAGCAATTACTTTGGCAAGTCATAATTTTAGTGTTTGaaatttaagattaaaaaaatgaGCGTCTTTTTCAGGGTAAGTTTGTGTTAGCATGTCTTCTGTGTAGCTTAATGTGTCATTCAGCTGAAGCTGCTAATTGAGTTTAGCATCTAGTGGTGCTGCCAGTGTTTGTTGGTTTACCCACTCAGGCGCTGTTATGTAAGGTGTTTCAGATTGTTCTCCTCAGGTTTCTGTGGGCAGATGCTCGTCCGTGAATGTGGGCGATGTGCTTTGACACGGTCAGATTTATTGCCTGGGCTCTGCAAACGTGGAGTAAGCCTGATAAACAGGCCTTCCTGTCCGCTCATCCATTCATACGTCCCGATGACAAGCGCATGTGTTTGGTGATGGATCTCCCGTTTTTGAAGAGCGCTGAGCTGTACTCCTCAGCTGATGGATGGTCCACACGTTCTGACCCGTCACGCTGGAGAAACCCACAGAAAATCCACCAAATCCACCTCAGAACATGAAATATGCTGAATTAGAAGAGTGCTCTCTCTGTGGAAttattgtaaaagttttaaagtgATGTGATTTAGTTTGAactgatcatgtgatgataaaaatttgTGATGGGACGCATTAATGCTCCAACTAGCATTTcgagcacattgtaaaactgaaaaatgttattttgctctttttaaaacCTCTGAACCATCAgtccgtcatcacagtgcttcagtgttattattattattaaattattaatcccTCAAGGACTCTTTTGAGCATCTGTCTGTGCTCCCAAAGAGCGTCTCATACCTCCAAAAGCCACCACGTTGCATTAGAGAAGAAAAAACAGCACAGTGGATTCTCCTACTGCACTAAACTACATTTCTGTCATCAGGAAGTGACCCTATGCTCTCTTAGTAAAACATTAGTACAACTTtgaaacatccacaaacaaaaATTTCTTAAATCCTCTCCCTCGTTTGCCCATTTTTTTTAATCGAAATTGATTCCATGCTTAAAGCTAtatgtagggccagacggaatctgcggacaatttttgctatttctgcagagaattttggtaaaaatctgcggatttctgcagaattattttgggagcatccagcgagtatcataactaaaaccttaatatatgaaataaaaagtaataaattactgaataaaaactgaataaattcagatttacacatttactcaagtaaataaacagaattaattatgTTCTCAAAATcggcagaaatctgcggaaaatggcggaaaatctgcggaattctgcacgcgcagattccgtgtgggcctagctatACGTCTATCTACCAACAAGAAATTCTGCAAGTTAATAGAAACTTATGAAAATATCATGCTTCCAGTATGTTAGTAAATAATGCtttctgtatttaaaaatgttatttttttgctttctgtatttttttaatttaatttaattttgtacttTCCTCATTTTGtcctcttttttattttctttctattaCTCCTTTCTTTTTACTTATTGTTCTTATTACTTTGTAATTGTATATTCTTGTATTCCAGTCTTCTACAGATTACTTCCTGATTTATATAGTAAAtttcttcttttctaaataaaagaagAATAGAATAAAAGAATAGTttgttcgaaaaaaaaaaatatcaacatgcttattcatactgCCCCACTCTATTTTTTGCATAATAAATTTCTATTCTGttaagtgactcaattaatttgaaattaaaatcttAACATTTTGT

Function

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0015031 protein transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-145 Predicted to enable chaperone binding activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport. Predicted to be located in membrane and mitochondrion. Predicted to be active in mitochondrial inner membrane. Orthologous to human TIMM44 (translocase of inner mitochondrial membrane 44).

Ensembl:

ensembl_id ENSDART00000189742

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042023 lncRNA upstream 280277 4064601 ~ 4167110 (+) False XLOC_020072
TCONS_00041862 lncRNA upstream 293606 4148883 ~ 4153781 (+) True XLOC_020072
TCONS_00042022 lncRNA upstream 347788 4064601 ~ 4099599 (+) False XLOC_020072
TCONS_00041861 lncRNA upstream 361913 4083596 ~ 4085474 (+) True XLOC_020073
TCONS_00042020 lncRNA upstream 1111506 3329052 ~ 3335881 (+) False XLOC_020067
TCONS_00041863 lncRNA downstream 213514 4680238 ~ 4687719 (+) True XLOC_020078
TCONS_00041864 lncRNA downstream 499717 4966441 ~ 4969159 (+) True XLOC_020081
TCONS_00042024 lncRNA downstream 636049 5102773 ~ 5103817 (+) False XLOC_020082
TCONS_00041865 lncRNA downstream 651589 5118313 ~ 5122556 (+) False XLOC_020083
TCONS_00040038 lncRNA downstream 651654 5118378 ~ 5119948 (+) False XLOC_020083
TCONS_00040025 mRNA upstream 1554 4442473 ~ 4445833 (+) False XLOC_020074
TCONS_00040026 mRNA upstream 1752 4443689 ~ 4445635 (+) True XLOC_020074
TCONS_00040024 mRNA upstream 518312 3914318 ~ 3929075 (+) False XLOC_020071
TCONS_00040023 mRNA upstream 518312 3914318 ~ 3929075 (+) True XLOC_020071
TCONS_00040019 mRNA upstream 1119146 3303671 ~ 3328241 (+) True XLOC_020066
TCONS_00040029 mRNA downstream 21730 4488454 ~ 4514657 (+) False XLOC_020076
TCONS_00040030 mRNA downstream 46883 4513607 ~ 4514433 (+) True XLOC_020076
TCONS_00040032 mRNA downstream 240939 4707663 ~ 4733106 (+) True XLOC_020079
TCONS_00040033 mRNA downstream 481199 4947923 ~ 4957762 (+) True XLOC_020080
TCONS_00040034 mRNA downstream 636625 5103349 ~ 5115637 (+) False XLOC_020082
TCONS_00040022 other upstream 686516 3760757 ~ 3760871 (+) True XLOC_020070
TCONS_00040021 other upstream 1059383 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040020 other upstream 1071117 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040015 other upstream 1214753 3231612 ~ 3232634 (+) True XLOC_020062
TCONS_00039978 other upstream 1815649 2631618 ~ 2631738 (+) True XLOC_020038
TCONS_00040031 other downstream 211143 4677867 ~ 4677981 (+) True XLOC_020077
TCONS_00040044 other downstream 659174 5125898 ~ 5130024 (+) True XLOC_020084
TCONS_00040049 other downstream 826489 5293213 ~ 5293301 (+) True XLOC_020087
TCONS_00040050 other downstream 833227 5299951 ~ 5300056 (+) True XLOC_020089
TCONS_00040051 other downstream 840761 5307485 ~ 5307574 (+) True XLOC_020090

Expression Profile

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