XLOC_020048


Basic Information

Item Value
gene id XLOC_020048
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2792575 ~ 2795451 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042017
ttcacaaaaatgtgcaCTTAAGATGACTTTGTGTATTGATTAGCTGTTGTTTTGTAAACCGTTATTAGTTTAGCGCGTTTTGTTACGCGCCCTCCTCGCCGTGATGACGTCAGCGCTTACGCGTTTattcagcgtcgagtcttcagagatgagCTCCGCCTTGAGTTCAGCTATAAATACTGGAATATTTTCATCAACAAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCTGCAAagacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggt
>TCONS_00039992
ATTttctgtttattcttttgcagCTCCGCCTTGAGTTCAGCTATAAATACTGGAATATTTTCATCAACAAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCTGCAAagacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAAGGTGGAGAGTGAAGTACTGaatgaagatgaggagaaacatcaggtcaaaagtaaagaaaaaatccAATCAGAGACTGAAGATAGTATTTCAGTGAATGGAACAGCAGTAAatagtttcacctgcactcagtgtggaaagacttTGAGCTGCAAAAGCACTTTcattaaacacatgaggatccacactggagagaaaccttaccagTGTTcgcactgcgacaagagattcagtttATCACAAAACCTGAAATCACacgagaggactcacactggagagaaaccttacaagtgttcacactgcgacaagagattcagtcatTCAGGAGTCCTAAAAACACACgtgaggatccacaccggagagaaaccgtatcaCTGCACtgattgtgggaagagtttcacatGTTCGTCTTCTCTACGATTACACACAAAAAACTATCACA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006401 RNA catabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0018205 peptidyl-lysine modification biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0051276 chromosome organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0043487 regulation of RNA stability biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0034708 methyltransferase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0035097 histone methyltransferase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0042393 histone binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042017 False 310 lncRNA 0.42 2 2792575 2793561
TCONS_00039992 True 625 mRNA 0.41 2 2793382 2795451

Neighbor

gene id symbol gene type direction distance location
XLOC_020047 si:dkey-20i20.9 coding upstream 10098 2778600 ~ 2782477 (+)
XLOC_020046 si:dkey-20i20.10 coding upstream 18767 2769236 ~ 2773808 (+)
XLOC_020045 si:dkey-20i20.11 coding upstream 33826 2751887 ~ 2758749 (+)
XLOC_020044 znf1163 coding upstream 73662 2715815 ~ 2718913 (+)
XLOC_020043 znf1171 coding upstream 79684 2709467 ~ 2712891 (+)
XLOC_020049 si:dkey-20i20.7 coding downstream 6013 2801464 ~ 2806799 (+)
XLOC_020050 NA coding downstream 19012 2814463 ~ 2827856 (+)
XLOC_020051 si:dkey-20i20.3 coding downstream 24162 2819613 ~ 2822021 (+)
XLOC_020052 si:dkey-20i20.8 coding downstream 35252 2830703 ~ 2838356 (+)
XLOC_020053 si:dkey-20i20.2 coding downstream 64809 2860260 ~ 2864139 (+)
XLOC_020038 CU896630.1 non-coding upstream 160837 2631618 ~ 2631738 (+)
XLOC_020033 NA non-coding upstream 245697 2546086 ~ 2546878 (+)
XLOC_020013 NA non-coding upstream 553482 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 614112 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 629129 2160039 ~ 2163446 (+)
XLOC_020054 NA non-coding downstream 126700 2922151 ~ 2927616 (+)
XLOC_020058 NA non-coding downstream 314585 3110036 ~ 3110513 (+)
XLOC_020061 NA non-coding downstream 423552 3219003 ~ 3222417 (+)
XLOC_020067 NA non-coding downstream 533601 3329052 ~ 3335881 (+)
XLOC_020000 NA non-coding upstream 501918 2007241 ~ 2290657 (+)

Expression


Co-expression Network