XLOC_020043 (znf1171)


Basic Information

Item Value
gene id XLOC_020043
gene name znf1171
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2709467 ~ 2712891 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039987
ttgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaaccggaagagactgaagaactaatagATGTGAtggtgaaggaggagagtgaagaactgagcgaagatgaggagaaacatcaggTCAAGAGCGAAGAAGAAACTCAATCAGAGGCTGAACAAAGTATTTTAATGGAAATACCAGCTGCAAATGATTTGACCTGCACtctgtgtggaaagagtttcaagaACAAACACACTCTGAAGAGTCACATGAAGAcgcacaccggagagaaaccgtacaagtgctcgcactgcgacaagagatttgGTAGGTCAGAATGCCGGAAAGTACATGAGCGGATTCACTCTGGAGAGAGACCGTACACATGCACTGAATGTTGGAAGAGTTTTATACAATTAGCAAACCTTAATGCACACATgctgatccacaccggagagaaagcATTCACATGCACACAGTGTCGGAAGAGTTTTACACTATTagcaaaccttaatcaacacatgaagatccacactggagagaaaccacacACATGTGATCAATGCGGCAAAGCATTCGTGAGGTCTTCACAGCTGAAGAACCATCTTAGTGTTCACACAAACGAGAAGCCGTATTCCTgctctgagtgtggaaag

Function

symbol description
znf1171 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-245 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000094242

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039987 True 645 mRNA 0.44 2 2709467 2712891

Neighbor

gene id symbol gene type direction distance location
XLOC_020041 zgc:194221 coding upstream 26708 2680895 ~ 2682759 (+)
XLOC_020040 znf1162 coding upstream 40685 2660505 ~ 2668782 (+)
XLOC_020039 znf1173 coding upstream 70230 2632961 ~ 2639237 (+)
XLOC_020038 CU896630.1 coding upstream 77729 2631618 ~ 2631738 (+)
XLOC_020037 CU570894.1 coding upstream 87866 2598998 ~ 2621601 (+)
XLOC_020044 znf1163 coding downstream 2924 2715815 ~ 2718913 (+)
XLOC_020045 si:dkey-20i20.11 coding downstream 38996 2751887 ~ 2758749 (+)
XLOC_020046 si:dkey-20i20.10 coding downstream 56345 2769236 ~ 2773808 (+)
XLOC_020047 si:dkey-20i20.9 coding downstream 65709 2778600 ~ 2782477 (+)
XLOC_020048 NA coding downstream 79684 2792575 ~ 2795451 (+)
XLOC_020033 NA non-coding upstream 162589 2546086 ~ 2546878 (+)
XLOC_020013 NA non-coding upstream 470374 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 531004 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 546021 2160039 ~ 2163446 (+)
XLOC_020050 NA non-coding downstream 101572 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 209260 2922151 ~ 2927616 (+)
XLOC_020058 NA non-coding downstream 397145 3110036 ~ 3110513 (+)
XLOC_020061 NA non-coding downstream 506112 3219003 ~ 3222417 (+)

Expression


Co-expression Network