XLOC_020007 (BX640537.1)


Basic Information

Item Value
gene id XLOC_020007
gene name BX640537.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2175857 ~ 2178463 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039905
CCGTGATGACGTCAACACTGACGCGTTCattcagcgtcgagtcttcagagctgagCAGGCAGAGAGAAGCTCTGAGAGGACAATATGAGCTCAATATGTGAAggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaaaactGAAATCGAAGCTCAGACAAAGACTGAAGAAGGTTTTTTAATGAGAAGAACAGCCGTGAaatgtttcacctgcactcagtgtggaaagagtttcagccatgAATACAATCTCAGGcgtcacatgatgatccacactggagagaaaccttacaagtgttcataTTGCGAGAAGAGCTTCAATTGTTCAGGAAACCTGAATAATCATGAGAGGATCCACACGGGGGAGAA
>TCONS_00039906
CCGTGATGACGTCAACACTGACGCGTTCattcagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaacacAGCAGGCAGAGAGAAGCTCTGAGAGGACAATATGAGCTCAATATGTGAAggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaaaactGAAATCGAAGCTCAGACAAAGACTGAAGAAGGTTTTTTAATGAGAAGAACAGCCGTGAaatgtttcacctgcactcagtgtggaaagagtttcagccatgAATACAATCTCAGGcgtcacatgatgatccacactggagagaaaccttacaagtgttcataTTGCGAGAAGAGCTTCAATTGTTCAGGAAACCTGAATAATCATGAGAGGATCCACACGGGGGAGAATACACAcaaatgtgatcagtgtggaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099408

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039905 False 387 processed_transcript 0.45 3 2175857 2178436
TCONS_00039906 True 549 processed_transcript 0.43 2 2175857 2178463

Neighbor

gene id symbol gene type direction distance location
XLOC_020006 BX640537.2 coding upstream 12411 2160039 ~ 2163446 (+)
XLOC_020005 znf1164 coding upstream 28018 2143107 ~ 2147839 (+)
XLOC_020004 si:dkeyp-79b7.3 coding upstream 45428 2129384 ~ 2130429 (+)
XLOC_020003 znf1155 coding upstream 50022 2120815 ~ 2125835 (+)
XLOC_020002 znf1144 coding upstream 57735 2111120 ~ 2118122 (+)
XLOC_020008 znf1152 coding downstream 4647 2183110 ~ 2187088 (+)
XLOC_020009 znf1165 coding downstream 10893 2189356 ~ 2389563 (+)
XLOC_020010 si:dkeyp-79b7.12 coding downstream 29039 2207502 ~ 2210578 (+)
XLOC_020011 znf1172 coding downstream 39472 2217935 ~ 2224093 (+)
XLOC_020012 znf1161 coding downstream 50456 2228919 ~ 2235260 (+)
XLOC_019991 BX640576.1 non-coding upstream 295187 1878147 ~ 1880670 (+)
XLOC_019977 BX649416.3 non-coding upstream 443747 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 510386 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 521919 1650128 ~ 1653938 (+)
XLOC_020013 NA non-coding downstream 58689 2237152 ~ 2239093 (+)
XLOC_020033 NA non-coding downstream 367623 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 453155 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 614112 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 636000 2814463 ~ 2827856 (+)

Expression


Co-expression Network