XLOC_020011 (znf1172)


Basic Information

Item Value
gene id XLOC_020011
gene name znf1172
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2217935 ~ 2224093 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039922
ATCACTGACGCGTTCATccagcgtcgagtcttcagagctgaggtgaCTGATCTGCTGTTTTAATGTTCATAGTCTTCTCTGTTTGTTCTCCTGAAGCTCTGCCGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaataggtttgtgtttATGTGATGGTcaaggaggagagtgaagatgaggagaaacatcacgtcaaaagtgaaaatgaaactcaATCAAAGACCGAACACAGTATTGTAGCAGTAAAAGCTTTGACCTGCActcaatgtggaaagagtttcagacgGAATTACGATCTCAAAGcacatgatgatccacaccggagagaagaaACACAAATGTGATCAGTGCGGCAAAACATTTCTGAGGCCTTACGAGTTGCAGAAACATCTCAGAGTTCACACAAAGGAGAGGCCTTACTCATGtcctgag
>TCONS_00039923
CTGACGCGTTCATccagcgtcgagtcttcagagctgagCTCTGCCGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaataggtttgtgtttATGTGATGGTcaaggaggagagtgaagatgaggagaaacatcacgtcaaaagtgaaaatgaaactcaATCAAAGACCGAACACAGTATTGTAGCAGTAAAAGCTTTGACCTGCActcaatgtggaaagagtttcagacgGAATTACGATCTCAAAGGTCACATGAggactcacaccggagagaaaccgttcacttgtactcagtgtgggaagagtttcacacaATTACCATACCTtcataaacacatgaggatccacccTGGGGAGAGACCGCACAAATGTGATCAGTGCAGcaagttatttttcattttttcagaGCTGAAGGAGCACCTTAGAGTTCATACGAAGGAGAAACCTTCATGCTctgtgtgtgg
>TCONS_00039924
agtttattaaagcgacaatctgcgactagtttatgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagagaggagctctgagaggacaatatgagtgaatgtCTCTGCCGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagATGTGATGGTcaaggaggagagtgaagatgaggagaaacatcacgtcaaaagtgaaaatgaaactcaATCAAAGACCGAACACAGTATTGTAGCAGTAAAAGCTTTGACCTGCActcaatgtggaaagagtttcagacgGAATTACGATCTCAAAGGTCACATGAggactcacaccggagagaaaccgttcacttgtactcagtgtgggaagagtttcacacaATTACCATACCTtcataaacacatgaggatccacccTGGGGAGAGACCGCACAAATGTGATCAGTGCAGcaagttatttttcattttttcagaGCTGAAGGAGCACCTTAGAGTTCATACGAAGGAGAAACCTTCATGCTctgtgtgtggaaagagttttacacgACATGTACTGAAAGTACATGAGAtgactcacaccggagagaaaccgtacacatgtagtcagtgtgggaagagcttcacACAGTTATCAAACCTTCATCagcacatgatgatccacaccggagagaagaaACACAAATGTGATCAGTGCGGCAAAACATTTCTGAGGCCTTACGAGTTGCAGAAACATCTCAGAGTTCACACAAAGGAGAGGCCTTACTCATGtcctgagtgtggaaagagttttacacgGCTGGCATAT

Function

symbol description
znf1172 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091896

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039922 False 501 processed_transcript 0.43 4 2217935 2224063
TCONS_00039923 False 531 mRNA 0.44 3 2217939 2223648
TCONS_00039924 True 880 mRNA 0.44 4 2218030 2224093

Neighbor

gene id symbol gene type direction distance location
XLOC_020010 si:dkeyp-79b7.12 coding upstream 7357 2207502 ~ 2210578 (+)
XLOC_020008 znf1152 coding upstream 30847 2183110 ~ 2187088 (+)
XLOC_020007 BX640537.1 coding upstream 39472 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 coding upstream 54489 2160039 ~ 2163446 (+)
XLOC_020005 znf1164 coding upstream 70096 2143107 ~ 2147839 (+)
XLOC_020012 znf1161 coding downstream 4826 2228919 ~ 2235260 (+)
XLOC_020013 NA coding downstream 13059 2237152 ~ 2239093 (+)
XLOC_020014 znf1144 coding downstream 15161 2239254 ~ 2242861 (+)
XLOC_020015 si:dkey-4c15.8 coding downstream 23552 2247645 ~ 2251297 (+)
XLOC_020016 si:dkey-4c15.9 coding downstream 36404 2260497 ~ 2266583 (+)
XLOC_019991 BX640576.1 non-coding upstream 337265 1878147 ~ 1880670 (+)
XLOC_019977 BX649416.3 non-coding upstream 485825 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 552464 1660187 ~ 1665471 (+)
XLOC_020033 NA non-coding downstream 321993 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 407525 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 568482 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 590370 2814463 ~ 2827856 (+)

Expression


Co-expression Network