XLOC_020015 (si:dkey-4c15.8)


Basic Information

Item Value
gene id XLOC_020015
gene name si:dkey-4c15.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2247645 ~ 2251297 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039931
CCGTTGTTCCCGCCTCTCAGCGATGACGTCGCCACTGACGCGTTCATccagcgtcgagtcttcagagctgagctctgccgtcatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagATGTGGtggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGGGAAGAAGAAACTCACGCAGAGGACGAACACAAAAAGAACgatttcacctgcactcagtgtggaaagagtttcagcagTAAATGTGATCTCAAGTCTCACATaatgatccacaccggagagaacccttacaagtgttcacactgcgacaagagattcaaaCATTCAGGACACTTGAAATCGCATGAGAAGACCCACACTGGACGGAAACGGCACAAATGTGATCAATGCAGCAAATTATTTTCAAGGCCTTCAATTTTGAAGATCCATCTTAGAGTtcatacaaaggagaagccttattcatgctctgagtgtggaaag
>TCONS_00039932
GATGACGTCGCCACTGACGCGTTCATccagcgtcgagtcttcagagctgagcagGCAGAGAGCAGCTCTGAGAGGACAATATGAGCTCAGAAACTTATTTATGTTGGTatttctctgtttgttctcctgaagctctgccgtcatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagATGTGGtggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGGGAAGAAGAAACTCACGCAGAGGACGAACACAAAAAGAACgatttcacctgcactcagtgtggaaagagtttcagcagTAAATGTGATCTCAAGTCTCACATaatgatccacaccggagagaacccttacaagtgttcacactgcgacaagagattcaaaCATTCAGGACACTTGAAATCGCATGAGAAGACCCACACTGGACGGAA

Function

symbol description
si:dkey-4c15.8 Predicted to enable metal ion binding activity.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092088

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039931 False 565 mRNA 0.45 3 2247645 2251297
TCONS_00039932 True 513 mRNA 0.45 4 2247666 2251185

Neighbor

gene id symbol gene type direction distance location
XLOC_020014 znf1144 coding upstream 4784 2239254 ~ 2242861 (+)
XLOC_020013 NA coding upstream 8552 2237152 ~ 2239093 (+)
XLOC_020012 znf1161 coding upstream 12385 2228919 ~ 2235260 (+)
XLOC_020011 znf1172 coding upstream 23552 2217935 ~ 2224093 (+)
XLOC_020010 si:dkeyp-79b7.12 coding upstream 37067 2207502 ~ 2210578 (+)
XLOC_020016 si:dkey-4c15.9 coding downstream 9200 2260497 ~ 2266583 (+)
XLOC_020017 znf1180 coding downstream 47122 2298419 ~ 2301530 (+)
XLOC_020018 znf1175 coding downstream 64699 2315996 ~ 2321783 (+)
XLOC_020019 zgc:174224 coding downstream 94455 2345752 ~ 2352152 (+)
XLOC_020020 si:dkey-4c15.12 coding downstream 106050 2357347 ~ 2361876 (+)
XLOC_020007 BX640537.1 non-coding upstream 69182 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 84199 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 366975 1878147 ~ 1880670 (+)
XLOC_019977 BX649416.3 non-coding upstream 515535 1725568 ~ 1732110 (+)
XLOC_020033 NA non-coding downstream 294789 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 380321 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 541278 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 563166 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 670854 2922151 ~ 2927616 (+)

Expression


Co-expression Network