XLOC_020020 (si:dkey-4c15.12)


Basic Information

Item Value
gene id XLOC_020020
gene name si:dkey-4c15.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2357347 ~ 2361876 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039945
CCGTTGTTCCCGCCTCGCCGTGATGACGCCAGCACTGACGCGTTCattcagcgtcgagtcttcagagctgagctctgccgtcatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacacTGAAGAACcaatagACGTGATGGTGAAGGAGGAATGTGAAGAACTGAGTGAACATGAGGAGAAACATGTCAAAAGTGAAGAAGAAACTCAATCAGAGACTGAAGATACAGCTGTGAAAGggttcacctgcactcagtgtggaaagtgtTTTGGGCGCAAGCACTGTCTCAATATTCACTTgaggagccacactggagagaaaccctaccagtgttcacactgcgacaagagattcagtcgtgcacaacacctgaaattacacgagaggattcacactggagagaaac

Function

symbol description
si:dkey-4c15.12 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095350

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039945 True 455 mRNA 0.47 3 2357347 2361876

Neighbor

gene id symbol gene type direction distance location
XLOC_020019 zgc:174224 coding upstream 5195 2345752 ~ 2352152 (+)
XLOC_020018 znf1175 coding upstream 35564 2315996 ~ 2321783 (+)
XLOC_020017 znf1180 coding upstream 55817 2298419 ~ 2301530 (+)
XLOC_020016 si:dkey-4c15.9 coding upstream 90764 2260497 ~ 2266583 (+)
XLOC_020015 si:dkey-4c15.8 coding upstream 106050 2247645 ~ 2251297 (+)
XLOC_020021 zgc:171435 coding downstream 28668 2390544 ~ 2394152 (+)
XLOC_020022 zgc:112977 coding downstream 41192 2403068 ~ 2405888 (+)
XLOC_020023 zgc:113220 coding downstream 47299 2409175 ~ 2421040 (+)
XLOC_020024 zgc:171435 coding downstream 69709 2431585 ~ 2444528 (+)
XLOC_020025 znf1177 coding downstream 89856 2451732 ~ 2452591 (+)
XLOC_020000 NA non-coding upstream 66690 2007241 ~ 2290657 (+)
XLOC_020013 NA non-coding upstream 118254 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 178884 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 193901 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 476677 1878147 ~ 1880670 (+)
XLOC_020033 NA non-coding downstream 184210 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 269742 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 430699 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 452587 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 560275 2922151 ~ 2927616 (+)

Expression


Co-expression Network