Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_020000 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 2007241 ~ 2290657 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070424-89 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00041849 | False | 5310 | lncRNA | 0.42 | 2 | 2007241 | 2207216 |
| TCONS_00039870 | False | 1152 | mRNA | 0.44 | 2 | 2040454 | 2107440 |
| TCONS_00039871 | False | 1152 | mRNA | 0.44 | 2 | 2048566 | 2107440 |
| TCONS_00041850 | False | 4957 | lncRNA | 0.42 | 2 | 2048566 | 2207216 |
| TCONS_00039872 | False | 1152 | mRNA | 0.44 | 2 | 2058394 | 2107440 |
| TCONS_00041851 | False | 5884 | lncRNA | 0.41 | 2 | 2090776 | 2207216 |
| TCONS_00039873 | False | 1401 | mRNA | 0.44 | 3 | 2100774 | 2107607 |
| TCONS_00041852 | False | 5718 | lncRNA | 0.42 | 2 | 2170742 | 2207216 |
| TCONS_00039899 | False | 1031 | mRNA | 0.43 | 3 | 2170887 | 2172529 |
| TCONS_00039900 | False | 540 | processed_transcript | 0.42 | 4 | 2170890 | 2172454 |
| TCONS_00039901 | False | 479 | mRNA | 0.44 | 3 | 2170893 | 2172189 |
| TCONS_00039902 | False | 452 | mRNA | 0.43 | 4 | 2170916 | 2172559 |
| TCONS_00039903 | False | 633 | mRNA | 0.42 | 3 | 2170989 | 2172252 |
| TCONS_00039904 | False | 830 | processed_transcript | 0.41 | 2 | 2171456 | 2172523 |
| TCONS_00039913 | False | 1537 | lncRNA | 0.37 | 2 | 2195963 | 2206816 |
| TCONS_00039914 | False | 2156 | mRNA | 0.40 | 3 | 2198246 | 2290657 |
| TCONS_00039915 | False | 646 | mRNA | 0.42 | 3 | 2198323 | 2202703 |
| TCONS_00039916 | False | 480 | mRNA | 0.43 | 3 | 2198411 | 2202606 |
| TCONS_00039917 | False | 273 | mRNA | 0.42 | 2 | 2198915 | 2202475 |
| TCONS_00039935 | False | 534 | processed_transcript | 0.45 | 3 | 2269395 | 2274734 |
| TCONS_00042015 | False | 1110 | lncRNA | 0.48 | 3 | 2271217 | 2275880 |
| TCONS_00042014 | False | 942 | lncRNA | 0.48 | 4 | 2271217 | 2275880 |
| TCONS_00039936 | True | 553 | mRNA | 0.42 | 4 | 2283368 | 2289706 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_019999 | zgc:174222 | coding | upstream | 46469 | 1953096 ~ 1960772 (+) |
| XLOC_019998 | si:dkey-15h8.15 | coding | upstream | 58214 | 1946676 ~ 1949027 (+) |
| XLOC_019997 | znf1167 | coding | upstream | 61789 | 1940595 ~ 1945452 (+) |
| XLOC_019996 | znf1153 | coding | upstream | 71397 | 1930589 ~ 1935844 (+) |
| XLOC_019995 | znf1181 | coding | upstream | 81895 | 1922293 ~ 1925346 (+) |
| XLOC_020017 | znf1180 | coding | downstream | 7762 | 2298419 ~ 2301530 (+) |
| XLOC_020018 | znf1175 | coding | downstream | 25339 | 2315996 ~ 2321783 (+) |
| XLOC_020019 | zgc:174224 | coding | downstream | 55095 | 2345752 ~ 2352152 (+) |
| XLOC_020020 | si:dkey-4c15.12 | coding | downstream | 66690 | 2357347 ~ 2361876 (+) |
| XLOC_020021 | zgc:171435 | coding | downstream | 99887 | 2390544 ~ 2394152 (+) |
| XLOC_019991 | BX640576.1 | non-coding | upstream | 126571 | 1878147 ~ 1880670 (+) |
| XLOC_019977 | BX649416.3 | non-coding | upstream | 275131 | 1725568 ~ 1732110 (+) |
| XLOC_019971 | NA | non-coding | upstream | 341770 | 1660187 ~ 1665471 (+) |
| XLOC_019970 | BX649416.2 | non-coding | upstream | 353303 | 1650128 ~ 1653938 (+) |
| XLOC_019963 | AL954741.1 | non-coding | upstream | 429495 | 1576863 ~ 1577746 (+) |
| XLOC_020033 | NA | non-coding | downstream | 255429 | 2546086 ~ 2546878 (+) |
| XLOC_020038 | CU896630.1 | non-coding | downstream | 340961 | 2631618 ~ 2631738 (+) |
| XLOC_020048 | NA | non-coding | downstream | 501918 | 2792575 ~ 2795451 (+) |
| XLOC_020050 | NA | non-coding | downstream | 523806 | 2814463 ~ 2827856 (+) |
| XLOC_020054 | NA | non-coding | downstream | 631494 | 2922151 ~ 2927616 (+) |
