RNA id: TCONS_00039900


Basic Information

Item Value
RNA id TCONS_00039900
length 540
RNA type processed_transcript
GC content 0.42
exon number 4
gene id XLOC_020000
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2007241 ~ 2290657 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATGACGTCAGCGCTGACGCGTTCATTCAGCGccgagtcttcagagctgagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaacccttcagaattaaacaggaagagactgaagaactaataggtttAAACTATTCAAGAGTGTAAAACACTAGCAGATTAACATGTGACTTATTCATTTTCAGATGTGATGGTGAAGGAGGAGAGCGAAGaactgagtgaagatgaggagaaacatcatgtcaaaactGAAATCAAAGCTCACATAATTACTGAAGATGCAATGGAAAGAACAGCCATGAaatgtttcacctgcactcagtgtggaaagagttacaGCCACGAATACAATCTCAAGcgtcacatgaagatccacactggagagaaaccttacaagtgttcctACTGCAACCAGAGTTTCAATTAGCTGAACAACTGAAGctgcaccagaggattcacactggagagaaaccgtacaagtgttcacactgcgacaagacatTCAGATGGTTACAAA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0010467 gene expression biological_process
GO:0008380 RNA splicing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000165738

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039863 lncRNA upstream 210570 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA upstream 210570 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039867 lncRNA upstream 210570 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00039868 lncRNA upstream 210732 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039862 lncRNA upstream 216102 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00041853 lncRNA downstream 16937 2189391 ~ 2389563 (+) False XLOC_020009
TCONS_00039913 lncRNA downstream 23509 2195963 ~ 2206816 (+) False XLOC_020000
TCONS_00042013 lncRNA downstream 64698 2237152 ~ 2239093 (+) False XLOC_020013
TCONS_00041854 lncRNA downstream 65166 2237620 ~ 2239093 (+) True XLOC_020013
TCONS_00041855 lncRNA downstream 82557 2255011 ~ 2389563 (+) False XLOC_020009
TCONS_00039890 mRNA upstream 23051 2143107 ~ 2147839 (+) False XLOC_020005
TCONS_00039894 mRNA upstream 23056 2143242 ~ 2147834 (+) False XLOC_020005
TCONS_00039893 mRNA upstream 23063 2143223 ~ 2147827 (+) False XLOC_020005
TCONS_00039896 mRNA upstream 23164 2144295 ~ 2147726 (+) False XLOC_020005
TCONS_00039897 mRNA upstream 23225 2144320 ~ 2147665 (+) True XLOC_020005
TCONS_00039907 mRNA downstream 10656 2183110 ~ 2187088 (+) False XLOC_020008
TCONS_00039908 mRNA downstream 10775 2183229 ~ 2187072 (+) False XLOC_020008
TCONS_00039910 mRNA downstream 16902 2189356 ~ 2193749 (+) False XLOC_020009
TCONS_00039911 mRNA downstream 16902 2189356 ~ 2193783 (+) False XLOC_020009
TCONS_00039912 mRNA downstream 21004 2193458 ~ 2194338 (+) False XLOC_020009
TCONS_00039898 other upstream 7444 2160039 ~ 2163446 (+) True XLOC_020006
TCONS_00039892 other upstream 26605 2143167 ~ 2144285 (+) False XLOC_020005
TCONS_00039885 other upstream 40461 2129527 ~ 2130429 (+) False XLOC_020004
TCONS_00039905 other downstream 3403 2175857 ~ 2178436 (+) False XLOC_020007
TCONS_00039906 other downstream 3403 2175857 ~ 2178463 (+) True XLOC_020007
TCONS_00039909 other downstream 11356 2183810 ~ 2187000 (+) True XLOC_020008
TCONS_00039919 other downstream 35052 2207506 ~ 2210550 (+) False XLOC_020010
TCONS_00039920 other downstream 35052 2207506 ~ 2210578 (+) False XLOC_020010

Expression Profile

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