RNA id: TCONS_00041853


Basic Information

Item Value
RNA id TCONS_00041853
length 1360
lncRNA type read_through
GC content 0.42
exon number 4
gene id XLOC_020009
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2189356 ~ 2389563 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtcgagtcttcagagctgagATCAGCACAGGGTGAAGATgtgtgatccagaaccctgccgAATTAAAGAGGAACAGACTGAAGAAATAATAGATGTGATagtgaaggaggagagtgaagaactgagtgaggatgaggagaaacatcaggTCAGTAGTGAAATCAAAACTCCTAATAGTTCTTTGATGAAAATAAACACCATAAAaggtttcacctgcactcagtgcggaaagagtttcagccaaaaACACTCTCTCAATGCTCAcacgaggatccacactggagagaaaccgtaccaGTGTTCACTCTGCGGCAAGAGATTCAGTCGGTCAGGACACCTGACAAGacatgagaggactcacactggagagaaaccgtgcCACTGCACTgcttgtgggaagagtttctCGGGTTCATGTTCGCTACGGAAGCACATGAAGAACATTCACAACAAAGCCCCGAAGGTCCGAACACAGGAGAAAACAAACTCATGCTCTTGGTGCGGAAAGAGTTTTACACACGGTTCAAGTTTAAGACGACATGagaggacccacactggagagaaaccatacacatgttctcagtgtgggaggagtttcattCGCTCATCACATCTCAATcgtcacatgaggatccacactggagagagaacaCACAAGTGCGATCAGTGCACCAAAGCGTTTTTCACTGCTTCAAATCTGAGGATCCACCTTAGAGTTCACACCCAGGAGAAGCCCTTTTCATGTTAtttgtgtggaaagagttttaaccatcagtcacatttaaaataccaccagaagatccacactggtgtgaaagatcATGTGTGCCTTGAGTGTGGGAAGACCTTTTTTAGGGCTGGAGAACTGAAAGaacaccagaggattcacaccggggagaaaccgtacacatgtactcagtgtgggaagagtttcacacaTTTGTCAACTATTAAAAACCACATGAAGAACCACACTGGAGGGAAAAAACTAAATGTGATCAATGAAGCCAAGCATTTTGAGGCCTTCAAAGCTGAAGAGACATCTTAGTGTTCCTACAAATGAGAAGAATTgttcatattttttgtttgtgacCATTTTTCCTGCTTGTATTTAAAATGACGattaggttaactatgtttaCGTTCATTTCCCATCATTCTATCATCATCTGAGGTAAACTCACTCACAGCATGGTAAATCTCTGGCCTGTATGATGTTGAgtgcaccaatagcctagtggttaatgCGTCGACACACTGCAGAATAAGATACAAGAGATCAAAAGCAAAACCAAAATgaaatgcatattaaaaaaagttgagaaatgaagcaataaaaaaataaacattcaagTAGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039863 lncRNA upstream 229071 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA upstream 229071 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039867 lncRNA upstream 229071 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00039868 lncRNA upstream 229233 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039862 lncRNA upstream 234603 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00042016 lncRNA downstream 156523 2546086 ~ 2546878 (+) True XLOC_020033
TCONS_00041858 lncRNA downstream 213114 2602677 ~ 2621601 (+) True XLOC_020037
TCONS_00042017 lncRNA downstream 403012 2792575 ~ 2793561 (+) False XLOC_020048
TCONS_00042018 lncRNA downstream 424900 2814463 ~ 2827856 (+) True XLOC_020050
TCONS_00042019 lncRNA downstream 532588 2922151 ~ 2927616 (+) True XLOC_020054
TCONS_00039907 mRNA upstream 2303 2183110 ~ 2187088 (+) False XLOC_020008
TCONS_00039908 mRNA upstream 2319 2183229 ~ 2187072 (+) False XLOC_020008
TCONS_00039902 mRNA upstream 16832 2170916 ~ 2172559 (+) False XLOC_020000
TCONS_00039899 mRNA upstream 16862 2170887 ~ 2172529 (+) False XLOC_020000
TCONS_00039903 mRNA upstream 17139 2170989 ~ 2172252 (+) False XLOC_020000
TCONS_00039953 mRNA downstream 981 2390544 ~ 2394152 (+) False XLOC_020021
TCONS_00039954 mRNA downstream 985 2390548 ~ 2394096 (+) True XLOC_020021
TCONS_00039955 mRNA downstream 13505 2403068 ~ 2405774 (+) False XLOC_020022
TCONS_00039956 mRNA downstream 13613 2403176 ~ 2405888 (+) True XLOC_020022
TCONS_00039957 mRNA downstream 19612 2409175 ~ 2420065 (+) False XLOC_020023
TCONS_00039909 other upstream 2391 2183810 ~ 2187000 (+) True XLOC_020008
TCONS_00039906 other upstream 10928 2175857 ~ 2178463 (+) True XLOC_020007
TCONS_00039905 other upstream 10955 2175857 ~ 2178436 (+) False XLOC_020007
TCONS_00039904 other upstream 16868 2171456 ~ 2172523 (+) False XLOC_020000
TCONS_00039900 other upstream 16937 2170890 ~ 2172454 (+) False XLOC_020000
TCONS_00039978 other downstream 242055 2631618 ~ 2631738 (+) True XLOC_020038
TCONS_00040015 other downstream 842049 3231612 ~ 3232634 (+) True XLOC_020062
TCONS_00040020 other downstream 985699 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040021 other downstream 995169 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040022 other downstream 1371194 3760757 ~ 3760871 (+) True XLOC_020070

Expression Profile

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