RNA id: TCONS_00039953


Basic Information

Item Value
RNA id TCONS_00039953
length 569
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_020021
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2390544 ~ 2394152 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTACGTTTCTCCCGCCTCGCCGTGATGACGTCAGCACCGACGCGTTCattcagcgtcgagtcttcagagctgaggtCAAATCTGTTTATTCTCTTGAAGCTCTGCCACAATCAATGACGCTCCACCTGCATTGAAGCTATAAATACTGGAATATTCCCATCAGACTATCAGGAAGAAGTGaaagtgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaataggtttCAAAGaactgagtgaagatgaggagaaacatgTTAAGAGTGAAGAAGAAACTCGGTCACAGACTGATTTCATCTGCACTGGTTTCATCTgcgctcagtgtggaaagagtttcaagtacacatacacactcaagattcacatgaggatccacaccggagagaaaccttaccagtgttcacactgcgacaagagattcagctATTCAGGACAACTGAAAACACACGAGAGGATTCACAACGGAGAGAGACCGCATCGCTGCACtgattgtgggaagagtttcacggATTCATCTTCCTTACAAAAACACC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080305-7 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000147345

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041853 lncRNA upstream 981 2189391 ~ 2389563 (+) False XLOC_020009
TCONS_00041855 lncRNA upstream 981 2255011 ~ 2389563 (+) False XLOC_020009
TCONS_00039949 lncRNA upstream 981 2368904 ~ 2389563 (+) False XLOC_020009
TCONS_00039950 lncRNA upstream 4577 2384327 ~ 2385967 (+) False XLOC_020009
TCONS_00041857 lncRNA upstream 46892 2307185 ~ 2343652 (+) False XLOC_020009
TCONS_00042016 lncRNA downstream 151934 2546086 ~ 2546878 (+) True XLOC_020033
TCONS_00041858 lncRNA downstream 208525 2602677 ~ 2621601 (+) True XLOC_020037
TCONS_00042017 lncRNA downstream 398423 2792575 ~ 2793561 (+) False XLOC_020048
TCONS_00042018 lncRNA downstream 420311 2814463 ~ 2827856 (+) True XLOC_020050
TCONS_00042019 lncRNA downstream 527999 2922151 ~ 2927616 (+) True XLOC_020054
TCONS_00039948 mRNA upstream 16371 2368904 ~ 2374173 (+) False XLOC_020009
TCONS_00039947 mRNA upstream 16448 2368875 ~ 2374096 (+) False XLOC_020009
TCONS_00039946 mRNA upstream 20458 2364835 ~ 2370086 (+) False XLOC_020009
TCONS_00039945 mRNA upstream 28668 2357347 ~ 2361876 (+) True XLOC_020020
TCONS_00039944 mRNA upstream 38392 2345752 ~ 2352152 (+) True XLOC_020019
TCONS_00039955 mRNA downstream 8916 2403068 ~ 2405774 (+) False XLOC_020022
TCONS_00039956 mRNA downstream 9024 2403176 ~ 2405888 (+) True XLOC_020022
TCONS_00039957 mRNA downstream 15023 2409175 ~ 2420065 (+) False XLOC_020023
TCONS_00039958 mRNA downstream 22953 2417105 ~ 2421040 (+) True XLOC_020023
TCONS_00039959 mRNA downstream 37433 2431585 ~ 2444528 (+) True XLOC_020024
TCONS_00039952 other upstream 1293 2385384 ~ 2389251 (+) True XLOC_020009
TCONS_00039951 other upstream 4577 2384327 ~ 2385967 (+) False XLOC_020009
TCONS_00039942 other upstream 54515 2328299 ~ 2336029 (+) False XLOC_020009
TCONS_00039935 other upstream 115810 2269395 ~ 2274734 (+) False XLOC_020000
TCONS_00039929 other upstream 148767 2239274 ~ 2241777 (+) False XLOC_020014
TCONS_00039978 other downstream 237466 2631618 ~ 2631738 (+) True XLOC_020038
TCONS_00040015 other downstream 837460 3231612 ~ 3232634 (+) True XLOC_020062
TCONS_00040020 other downstream 981110 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040021 other downstream 990580 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040022 other downstream 1366605 3760757 ~ 3760871 (+) True XLOC_020070

Expression Profile

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