XLOC_020024 (zgc:171435)


Basic Information

Item Value
gene id XLOC_020024
gene name zgc:171435
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2431585 ~ 2444528 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039959
atgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagATGTGATGGTGAAGGCGAAGACTAAAGaactgagtgaagatgaggagaaacatcatgtcaaaactGAAGGAGAAACTCAGTCAGAGATTGATCATAGTTTTTTAGTGAATACAACAGCCGTAAAaggtttcacctgcactcagtgtggaaagagttttaggcATAAACGGGATTTCAATcgtcacatgaggatccacactggagagaaacctttccagtgttcacactgcgacaagagattcagtgaACCAGGAAACCTGAAAtcacacatgaggatccacaccggagagaaaacacacacatgtgatcaatgcggcaaaacatttttgaggtCTACAGATCTGAAGACCCATCTTAGAGTTCATACAAACGAGAGGCCTTATCCATgctctgagtgtggaaagagttataCACATCGATATATTTTGAAAGTACATCAGAAggtccacactggtgtgagagactTTGTGTGCTtagagtgtgggaagagttttaccaGCACTGGAAACTTGAAACAACACCAGATGatgcacactggagagaaaccgtacaagtgttcacactgcgacaagggATTTGGTTGGTTAAAAtcactgaaaacacatgagagggtccacactggagagaaaccttaccagtgttcacactgtgacaaaaGATTCAGTCTGTTACAATCCCAGAAACGACACCAGAGGACTCACACTGTAGAGATACTGTACACCAGGGGAGTCCAAATTCGgccctcgagggccggtgtccagcagagttTAGCCCCAGCTTGCCTgaacacacctgcagggatgtttttagaaagccaataa

Function

symbol description
zgc:171435 Predicted to enable metal ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080305-7 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000111899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039959 True 876 mRNA 0.44 2 2431585 2444528

Neighbor

gene id symbol gene type direction distance location
XLOC_020023 zgc:113220 coding upstream 10545 2409175 ~ 2421040 (+)
XLOC_020022 zgc:112977 coding upstream 25697 2403068 ~ 2405888 (+)
XLOC_020021 zgc:171435 coding upstream 37433 2390544 ~ 2394152 (+)
XLOC_020020 si:dkey-4c15.12 coding upstream 69709 2357347 ~ 2361876 (+)
XLOC_020019 zgc:174224 coding upstream 79433 2345752 ~ 2352152 (+)
XLOC_020025 znf1177 coding downstream 7204 2451732 ~ 2452591 (+)
XLOC_020026 si:ch73-92e7.4 coding downstream 15063 2459591 ~ 2629471 (+)
XLOC_020027 CU570894.2 coding downstream 28694 2473222 ~ 2659494 (+)
XLOC_020028 CU856622.1 coding downstream 51401 2495929 ~ 2499296 (+)
XLOC_020029 znf1170 coding downstream 59996 2504524 ~ 2505296 (+)
XLOC_020000 NA non-coding upstream 140928 2007241 ~ 2290657 (+)
XLOC_020013 NA non-coding upstream 192492 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 253122 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 268139 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 550915 1878147 ~ 1880670 (+)
XLOC_020033 NA non-coding downstream 101558 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 187090 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 348047 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 369935 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 477623 2922151 ~ 2927616 (+)

Expression


Co-expression Network