XLOC_020026 (si:ch73-92e7.4)


Basic Information

Item Value
gene id XLOC_020026
gene name si:ch73-92e7.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2459591 ~ 2629471 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039961
cacctatttgaccattaaagcgctcacgttaagatgactttagatgtctgcgctccgctgctcgtctcagtgtgcgaatgagaccgaatgctgaccggccgcatgcttctgactgcgtgtgcttgctgcacacacaaataagcacgcggtctttcgcgcttttagaaGCAACAAACGtgaacaactggaaagggggcggtttaTGATGCAATAAACTTTATCtcaattaatgctttttttataatcgtttgaaatcgaaaccggattttcgattaattgtacagccgtataaaatagtggagcatttttatgcctttttctacctcaacacttgggaaccactgccctaggctattgcgccgagtTATATATACACAAAGCCCTGTCACAATATCAGATCCAGCACTTTTATCACATTGAAGTTTATAAGCGCTCATGCTGTGTGTATCAGACAGTTCACAATATCACAGCTGAAGTTCAGATAGAATTGTTTTGCAGCATTATTAACCAATTATAGCCTAGTTCCCAATTAttgatcagttttttttaagcttttattCACTTATATTCTCTCTACATACAAATCTATTTTTAGTCAGAATTGCTCGCACTGTTAGCAAAACCTAGCCTCTTGAAATGTAACTTCATTTTCAGATGTGATGGTGAAGACCGAAGaactgagtgaagatgaggagaaacatcaggTCAGAAGTGAAGAAGAAACTCAATCAGAGATTGAACATAGTATTTCAGTGAAAACAACAACCGTAAAAGGTTTCACCTgctctcagtgtggaaagagtttcaggcaTAAATGTGATCTCAATcgccacatgaggatccacaccggagagaaaccgtaccaGTGTTCGCACTGCCACAAGAGATTCGGGGATTCAGGAAACCTGAAAATACATGAgtggatccacactggagagaaaccgtatcgCTGCACtgattgtgggaagagtttcagacaatcATTTGTTCTACAAAAGCACAGAAAAAAATATCACGACCCGATGGTGGAGGGGATGAATAAAAATGTCCGTTGTCAATATTCCTGCTCtttgtgtggaaagagttttaggcATCAAGCATGTTTCTGGAGACATAagaagattcacactggagagagaccgcacacatgtgctcagtgtgggaaaagttttgtacaatcatcataccttaaaaaACACCTGCAAATCCACACTGGAGTGAAACCACACGCATGTGATCAATGCAGCAAATCATTTTTTACCCGTTCAGATTTGAAGAAACATCTTGCACTTCATACGAACGAGAAGCCGTACTCCTgctctgagtgtggaaagagttttattCTTCAGGCATATTTAAGAAAACATCAGAAGATTCACACCGGTGTGAGAGAGTTTGCATGCTTTGAGTGTGGGAGGGGTTTTATTATACCTGGAGACTTGAAACGACAccagaggactcacactggagagaaaccttaccagTGTTCACAATGCGAAAAGAGATTCAGTCAGTTACATATCCTGAAAATACAccagaggactcacactggagagagaccgtacacatgtactcagtgcgggaagagtttcacacactcatcaaaccttaatacacacatgaagatccacactggagggAAAACCAGCCCTGTTTCTATCTAAAGATGCAAATTAGATTCATGTGCAAAAGTGAAACATCACATAAAACAtctgtgaataaagcagcgtttccatccaatgagtcaaacaGAACTAAACCATCATGTCCTGATACACTAGCAGCAAATATCAGACAGAAAAATGTAGTTATGTGCGGACGGAGAAGCCAATGTGCacctttattatattaaattacttGCGGATCAgaagacgaaatgcaatgaaCGCAATGTGTTGGCTGTTGGAGATGCTCAAGAGAGTTCTGAAggtaatactataataataatgaaccactgtgatgacagactttagCTGAGGCGTTTTGgaaagaccaaaacaacatttcagatgttttacaatgtggtttgTCATCTAAAACATCGTGCCAATAGTGTGACGCATTCATGTGTTCTGACCAGGGcttaattaacataattaagcaCATTATCAAAATGCAGAGCTCatgtttttatgtaaaattttCTTAAGCATATTTATCACCTgtaattgttcatttttattcattagagGTTTTTCAGCATGTTCAGTTTGTGTCTGTTCAGGAAAGAGAATCTTTACAGTTTTAAGATTAAAAACTGAGATTTATTGAACTTCGTTATTTCTAAAACTGGATAACAACTGTGATAAATGATCATTATTTCATTAACATTACCTTCTAGCAGACATGTATAAATACTAATTTTTATTAATcatcttttaatattttgttaaaaaacgTTTGTTTACTGAAAGTGAGTTGTTAATTATGAAaaagatgattttattttataatcttaTTTCTGTCAGCCATGAAGGATCACGTTTGTTCTTCATTTAGctacttttaaagtgaaataaacagtatttCGCCTTATGATTAAGATTTTTGTCCTCATTACTAGTAAATGTTTTGGCTTCTCAATAGTTGATTTGGAGCGTTTGTTTACGATCCTCTGTTGCGGCCGCCTCGCCGTAATGACGTCACTACTGACGCCTTCattcagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacattttacagtttattaaagcgacaatctgcgactagtttttgcattgagttcacctctatctgtgtgtctgctgaccacAACAATACAGCAGGTAGAGAGGAGCTCTGAGATGTGTGTTGGAGTGTTCCCACTGTTTGTTATATCTCGAAGTATAATATGAGGAGAGAAATAATGGGACCCATATGAGTTTTTTGTAGCACAAAGTATTTACAAGTTTGTGTTTTGCTAGTTTGTGTTAGCGATATAATTTCTGTGTTTGAATAAACCTATGTTCTAACTATATAGATTGCTATGAAAAAAACTTGATAAATTCCTGGTATGTGGTATTTCATATCAATAGCTCTTGTTTTTACCTGAGTTATACCGATGACTTCAGATCTACACATTGGCACATagctttattatcatttatttcgTCAATCAGTGTAAACTAAGCAATTTTTTGTTTCCTATTTAGAAGCTCGTCCTTCTTCAGTTCAGCTGTAAATACTGGAGTATTTCCATCAGTCTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaataggtttgtgtttattcattactcttTAAAATTGAGGCCGAACAGTAAGATTGGGAATCTTTTAAGTCTGCATATATTTTggtcaatttttattattatttggttatgaaaaaaaatgtaaaacaagcctttttttgtttacgttttaaaattcaaaaattaaaatagaaatatgaGGCGT
>TCONS_00039977
cTCATCCTCTTTCAGTTCAGCTGTAAATACTGGAAGATTGCCATCAGTCTACAAGTGAAGACGAGCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgtgtttattcattattaaGATCTCCATCAGGTTGTtctttttcagtttaaaaataaatatgtgttttaaaaagtcaGCTCTCTGAGCAATATGACTTGATTCAAACATATCAGAACTTGACCTGTTTAGAGTGAACTCCTGACTTGATGAGAGCTTGATTTGTCTGAACTGTGGAGTTAGATTTGATGGTGAATAACTTGAGACTTGCTCTGACTTGACCACGTGTGTCTTGTCCTCGTCTCTGTTAAAAATTACCAGACTGTGAATGATGATCCACAAACTACAGCAGGGGTTGCCTAGCCTCTCAAAATCTAACTTATTTACTTCATTTTCAGAtgtgaaggaggagagtgaagaactgagtGAAGATGAAGAGAAACATCAGGTCAAAAGTGAAGAAGAAACTCAATCAGAGCCTGAACAAAGTATTTTAGTGGAAAGAACAGCTGTTAAAGGTTcgacctgcactcagtgtggataCACTTTCAGGCATAAAAATGATCTCAGTCGTCAcaagaggatccacactggagagaaaccttacaagtgttcacactgcgacaagagattcagcgATTCAGGACGCCGGAAATCACACGAGAGGATTCACTCTGGAGAGCGACCATTTCACTGCACTGATTGTGGGAACAGTTTCAGACATAAATCTTCTCTGCGAAGACACACACAAATCTTTCACAACCCGATGGTGGAGGGGATGAATAAAAATGTCCGTTGTCAATATTCCTGCTCtttgtgtggaaagagttttaggcATCAAGCATGTTTCTGGAGACATAagaagattcacactggagagagaccgcacacatgtgctcagtgtgggaaaagttttgtacaatcatcataccttaaaaaACACCTGCAAATCCACACTGGAGTGAAACCACACGCATGTGATCAATGCAGCAAATCATTTTTTACCCGTTCAGATTTGAAGAAACATCTTGCACTTCATACGAACGAGAAGCCGTACTCCTgctctgagtgtggaaagagttttattCTTCAGGCATATTTAAGAAAACATCAGAAGATTCACACCGGTGTGAGAGAGTTTGCATGCTTTGAGTGTGGGAGGGGTTTTATTATACCTGGAGACTTGAAACGACAccagaggactcacactggagagaaaccttaccagTGTTCACAATGCGAAAAGAGATTCAGTCAGTTACATATCCTGAAAATACAccagaggactcacactggagagagaccgtacacatgtactcagtgcgggaagagtttcacacactcatcaaaccttaatacacacatgaagatccacactggagggAAAACCAGCCCTGTTTCTATCTAAAGATGCAAATTAGATTCATGTGCAAAAGTGAAACATCACATAAAACAtctgtgaataaagcagcgtttccatccaatgagtcaaacaGAACTAAACCATCATGTCCTGATACACTAGCAGCAAATATCAGACAGAAAAATGTAGTTATGTGCGGACGGAGAAGCCAATGTGCacctttattatattaaattacttGCGGATCAgaagacgaaatgcaatgaaCGCAATGTGTTGGCTGTTGGAGATGCTCAAGAGAGTTCTGAAggtaatactataataataatgaaccactgtgatgacagactttagCTGAGGCGTTTTGgaaagaccaaaacaacatttcagatgttttacaatgtggtttgTCATCTAAAACATCGTGCCAATAGTGTGACGCATTCATGTGTTCTGACCAGGGcttaattaacataattaagcaCATTATCAAAATGCAGAGCTCatgtttttatgtaaaattttCTTAAGCATATTTATCACCTgtaattgttcatttttattcattagagGTTTTTCAGCATGTTCAGTTTGTGTCTGTTCAGGAAAGAGAATCTTTACAGTTTTAAGATTAAAAACTGAGATTTATTGAACTTCGTTATTTCTAAAACTGGATAACAACTGTGATAAATGATCATTATTTCATTAACATTACCTTCTAGCAGACATGTATAAATACTAATTTTTATTAATcatcttttaatattttgttaaaaaacgTTTGTTTACTGAAAGTGAGTTGTTAATTATGAAaaagatgattttattttataatcttaTTTCTGTCAGCCATGAAGGATCACGTTTGTTCTTCATTTAGctacttttaaagtgaaataaacagtatttCGCCTTATGATTAAGATTTTTGTCCTCATTACTAGTAAATGTTTTGGCTTCTCAATAGTTGATTTGGAGCGTTTGTTTACGATCCTCTGTTGCGGCCGCCTCGCCGTAATGACGTCACTACTGACGCCTTCattcagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacattttacagtttattaaagcgacaatctgcgactagtttttgcattgagttcacctctatctgtgtgtctgctgaccacAACAATACAGCAGGTAGAGAGGAGCTCTGAGATGTGTGTTGGAGTGTTCCCACTGTTTGTTATATCTCGAAGTATAATATGAGGAGAGAAATAATGGGACCCATATGAGTTTTTTGTAGCACAAAGTATTTACAAGTTTGTGTTTTGCTAGTTTGTGTTAGCGATATAATTTCTGTGTTTGAATAAACCTATGTTCTAACTATATAGATTGCTATGAAAAAAACTTGATAAATTCCTGGTATGTGGTATTTCATATCAATAGCTCTTGTTTTTACCTGAGTTATACCGATGACTTCAGATCTACACATTGGCACATagctttattatcatttatttcgTCAATCAGTGTAAACTAAGCAATTTTTTGTTTCCTATTTAGAAGCTCGTCCTTCTTCAGTTCAGCTGTAAATACTGGAGTATTTCCATCAGTCTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaataggtttgtgtttattcattactcttTAAAATTGAGGCCGAACAGTAAGATTGGGAATCTTTTAAGTCTGCATATATTTTggtcaatttttattattatttggttatgaaaaaaaatgtaaaacaagcctttttttgtttacgttttaaaattcaaaaattaaaatagaaatatgaGGCGT

Function

symbol description
si:ch73-92e7.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092849

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039961 False 3554 mRNA 0.37 2 2459591 2629471
TCONS_00039977 True 3414 mRNA 0.37 2 2623006 2629471

Neighbor

gene id symbol gene type direction distance location
XLOC_020025 znf1177 coding upstream 7000 2451732 ~ 2452591 (+)
XLOC_020024 zgc:171435 coding upstream 15063 2431585 ~ 2444528 (+)
XLOC_020023 zgc:113220 coding upstream 38551 2409175 ~ 2421040 (+)
XLOC_020022 zgc:112977 coding upstream 53703 2403068 ~ 2405888 (+)
XLOC_020021 zgc:171435 coding upstream 65439 2390544 ~ 2394152 (+)
XLOC_020038 CU896630.1 coding downstream 2147 2631618 ~ 2631738 (+)
XLOC_020039 znf1173 coding downstream 3490 2632961 ~ 2639237 (+)
XLOC_020040 znf1162 coding downstream 31034 2660505 ~ 2668782 (+)
XLOC_020041 zgc:194221 coding downstream 51424 2680895 ~ 2682759 (+)
XLOC_020042 si:dkey-20i20.15 coding downstream 56412 2685883 ~ 2870110 (+)
XLOC_020000 NA non-coding upstream 168934 2007241 ~ 2290657 (+)
XLOC_020013 NA non-coding upstream 220498 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 281128 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 296145 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 578921 1878147 ~ 1880670 (+)
XLOC_020048 NA non-coding downstream 163104 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 184992 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 292680 2922151 ~ 2927616 (+)
XLOC_020058 NA non-coding downstream 480565 3110036 ~ 3110513 (+)

Expression


Co-expression Network