XLOC_020042 (si:dkey-20i20.15)


Basic Information

Item Value
gene id XLOC_020042
gene name si:dkey-20i20.15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2685883 ~ 2870110 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039985
agcgtcgagtcttcagagctgaggtgagtcgttgtcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagctGGCGGAGAGCAGCTCTGAGAGGACAATATGATTCAGCTGTAAATACTTGAATATTCCCATCAGTCTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaataggTGTGAtggtgaaggaggagagtgaagaactgagtGAAAATAAGGAGAAACATCAGGTCAAAAGTGAAGAAGAAACTCAATCAGAGACTGAACAAACTATTTCAATGAAGAGAAAAGCAGTAAAATGTttgacctgcactcagtgtggaaagagtttcaagaACAAAGTCACTCTCAGTCGTCACGtgaagatccacaccggagagaaaccctaccagtgttcacactgcggcaagagattcattcattcaggacAATTGAAAATACacgagaggactcacactggagagaaaccgtatcaCTGCACtgattgtgggaa
>TCONS_00039986
atgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagACCTGGCGGACAAGACGGAGGAGAGCGAGGGACAGAGTGTCAAAAATAGACAACCAAAATCCCGTGCATGGACAAAAGGTGCTGCTTCTCAGAAGAGCAGAGGTGAGATTTGCTCTGTGTGCGGAAAGAGTTTCAGTAATAAGCGTAATCTTCAAATTCACACgaggattcacactggggagaaaccgTACACGTGTCCTGAGTGCGGGAAGAGCTTCAATCAGTCGTCGACTCTCATCACACACACGAGGatccacactggggagaaaccgtacaagtgtggTCAGTGCGACAGAACGTTTGTGAGGATTTCAGATCAGAAGAAACATTTCAGAGTTCACAGCAAGGATAAGCCCTACTCATGCTCTGACTGCGGAAAGAGATTTGCACATCAGTCGAATTTAAGTAAACACCAGAAGATCCACAGCGGTGTGAGAGAGCATGTGTGCTTCGAGTGTGGGAAGAGCTTTGTCACAGCTGAACATTTGAAAcagcaccagaggattcacactggagagaaaccgtacaagtgttcacactgcgacaaagCTTTCAATCAGTTAATACACCTGAAAATACacgagaggactcacactggagagaaaccgtacaagtgttcccACTGCGGCAAGACGTTCAGTCAGTCACCAACCCTCAAAGCGCACAgcaggactcacactggagagagaccgtacGTTTGTGTTGAATGTGGAGAGAGTTTCAATCATTTGCTTTCTCTACGCATTCATATAAGAAAGAGTCACATTAAATGTGAACTTGCCGATATTTAA
>TCONS_00039997
CGCGATGACGTCAGCACTGACGCGTTCATccagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcgGAGGAGCTCTGAGGACAATGTGATTCAGGTGTAAATACTGGAGTATTCGCATCAGTCTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagATGTGCtggtgaaggaggagagtgaagaactgagtgaggatgaggagaaacatcaggTCAAAAGTGAAGATGAAACTGAACATAGTGTTTCGGTGAAAAGAACTGTGGAAAAAGGTTTGACCTGcactgagtgtggaaagagtttcgaTCGCAAATACCATCTCAAtcatcacatgatgatccacaccggagagaaaccttaccagtgttcacactgcgacaagagattcagacATTCAGGGTACCTGAAAACACACGAGAggactcacaccggagagaaaccacacaaatgtgatcaatgcggcaA
>TCONS_00039998
atgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagACCTGGCGGACAAGACGGAGGAGAGCGAGGGACAGAGTGTCAAAAATAGACAACCAAAATCCCGTGCATGGACAAAAGGTGCTGCTTCTCAGAAGAGCAGAGGTGAGATTTGCTCTGTGTGCGGAAAGAGTTTCAGTAATAAGCGTAATCTTCAAATTCACACgaggattcacactggggagaaaccgTACACGTGTCCTGAGTGCGGGAAGAGCTTCAATCAGTCGTCGACTCTCATCACACACACGAGGatccacactggggagaaaccgtacaagtgtggTCAGTGCGACAGAACGTTTGTGAGGATTTCAGATCAGAAGAAACATTTCAGAGTTCACAGCAAGGATAAGCCCTACTCATGCTCTGACTGCGGAAAGAGATTTGCACATCAGTCGAATTTAAGTAAACACCAGAAGATCCACAGCGGTGTGAGAGAGCATGTGTGCTTCGAGTGTGGGAAGAGCTTTGTCACAGCTGAACATTTGAAAcagcaccagaggattcacactggagagaaaccgtacaagtgttcacactgcgacaaagCTTTCAATCAGTTAATACACCTGAAAATACacgagaggactcacactggagagaaaccgtacaagtgttcccACTGCGGCAAGACGTTCAGTCAGTCACCAACCCTCAAAGCGCACAgcaggactcacactggagagagaccgtacGTTTGTGTTGAATGTGGAGAGAGTTTCAATCATTTGCTTTCTCTACGCATTCATATAAGAAAGAGTCACATTAAATGTGAACTTGCCGATATTTAA

Function

symbol description
si:dkey-20i20.15 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110106 ENSDARG00000114349

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039985 False 668 mRNA 0.42 3 2685883 2690727
TCONS_00039986 False 846 mRNA 0.46 2 2686673 2870110
TCONS_00039997 False 693 mRNA 0.45 3 2844865 2850562
TCONS_00039998 True 846 mRNA 0.46 2 2845763 2870110

Neighbor

gene id symbol gene type direction distance location
XLOC_020041 zgc:194221 coding upstream 3124 2680895 ~ 2682759 (+)
XLOC_020035 CU896630.2 coding upstream 9256 2562101 ~ 2676627 (+)
XLOC_020040 znf1162 coding upstream 17101 2660505 ~ 2668782 (+)
XLOC_020039 znf1173 coding upstream 46646 2632961 ~ 2639237 (+)
XLOC_020038 CU896630.1 coding upstream 54145 2631618 ~ 2631738 (+)
XLOC_020054 NA coding downstream 52041 2922151 ~ 2927616 (+)
XLOC_020055 cep19 coding downstream 67375 2937485 ~ 2942954 (+)
XLOC_020056 impact coding downstream 89769 2959879 ~ 3026838 (+)
XLOC_020057 LO017843.1 coding downstream 175385 3045495 ~ 3078347 (+)
XLOC_020058 NA coding downstream 239926 3110036 ~ 3110513 (+)
XLOC_020033 NA non-coding upstream 139005 2546086 ~ 2546878 (+)
XLOC_020013 NA non-coding upstream 446790 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 507420 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 522437 2160039 ~ 2163446 (+)
XLOC_020061 NA non-coding downstream 348893 3219003 ~ 3222417 (+)
XLOC_020067 NA non-coding downstream 458942 3329052 ~ 3335881 (+)
XLOC_020068 CU652528.1 non-coding downstream 505152 3375262 ~ 3376270 (+)

Expression


Co-expression Network