XLOC_020061


Basic Information

Item Value
gene id XLOC_020061
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3219003 ~ 3222417 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041860
CTTAAATTTAAGAAACATTGTGAGCACACCCATGGCTTTTATTTCATCTTGTGTAAAAACCCTTGAGACTCACCATGATCTTTGACCTTTGTTCGTCACAGGTGATGCGTGCAGGTGGAAACCAGCGACCTCTCACTCCAAGTCAAGGACAGCAGGGTCAGCAGACGGAGCAGCTCGTAGCGGCAGCAGCTGTGAACTCGGCATTGGCTTTTGGGCAGGGTCTGGCAGCAGGTGTACCAGGTTATCCAGTGTTGGCTCCTGCTGCATATTATGACCAGACAGGTGCACTTGTGGTGAATACAGGAGCTCGTGGAGGACCCGTTCGACTTATGGCCCCCGCATCAGTAATCATCAGCCCATCAGCCGCagTGGCTGCTGCCGCCGCTTCAGCAGGAGGGGCGAATGCAGGTCTCGGTGGTGGAGCCAGCGGTGCGTTTCGTGCATTGAGTTCCCAGCAGGCTCCTGGGCAGCAAGGGAGCGGGGCTTTGGGAGGAAGCTCTTTTTATGGGAGCGGATCTCCGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041860 True 522 lncRNA 0.55 3 3219003 3222417

Neighbor

gene id symbol gene type direction distance location
XLOC_020060 ftsj3 coding upstream 4459 3184500 ~ 3214544 (+)
XLOC_020059 rpl36 coding upstream 59547 3153876 ~ 3159456 (+)
XLOC_020058 NA coding upstream 108490 3110036 ~ 3110513 (+)
XLOC_020057 LO017843.1 coding upstream 140656 3045495 ~ 3078347 (+)
XLOC_020056 impact coding upstream 192165 2959879 ~ 3026838 (+)
XLOC_020062 lim2.2 coding downstream 1072 3223489 ~ 3232634 (+)
XLOC_020063 CU929402.1 coding downstream 10508 3232925 ~ 3234494 (+)
XLOC_020064 si:ch1073-178p5.3 coding downstream 16057 3238474 ~ 3239834 (+)
XLOC_020065 CU929402.2 coding downstream 22533 3244950 ~ 3271707 (+)
XLOC_020066 gipc3 coding downstream 81254 3303671 ~ 3328241 (+)
XLOC_020054 NA non-coding upstream 291387 2922151 ~ 2927616 (+)
XLOC_020050 NA non-coding upstream 391147 2814463 ~ 2827856 (+)
XLOC_020048 NA non-coding upstream 423552 2792575 ~ 2795451 (+)
XLOC_020038 CU896630.1 non-coding upstream 587265 2631618 ~ 2631738 (+)
XLOC_020067 NA non-coding downstream 106635 3329052 ~ 3335881 (+)
XLOC_020068 CU652528.1 non-coding downstream 152845 3375262 ~ 3376270 (+)
XLOC_020069 CU539058.1 non-coding downstream 162315 3384732 ~ 3388004 (+)
XLOC_020070 CABZ01031768.1 non-coding downstream 538340 3760757 ~ 3760871 (+)
XLOC_020072 NA non-coding downstream 842184 4064601 ~ 4167110 (+)

Expression


Co-expression Network