XLOC_020040 (znf1162)


Basic Information

Item Value
gene id XLOC_020040
gene name znf1162
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2660505 ~ 2668782 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039982
TGCGCCCGCCTCGCCGTGATGACGTCACAACAGACGCGTTCattcagcgtcgagtcttcagagctgaggtgagtcgttgtCGCTTTATCTCGTGTTTACACAAcgataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagaGAGGAGATCTGAGAGGACAAAACTATAACGCTGTAAATACTGGAATATCCCCATCAGTCTACAACTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagGTGTGATGGTaaaggaggagagtgaagacctGAGCGgagatgaggagaaacatcatgtcaagaGTGAGGAAGAAACTCAATCAGAGACTGAACATAGGATTTCAATTGAAAGAACAGCTGGTAAaggtttcacctgcactcagtgcgGAAAGAGTTTCAAGAACAAACACCTTCTCAAGCGTCATGtgatgatccacaccggagagaaaccttaccagtgttcacactgcgacaagagattcaatGATTCAGGAAACCTGAAAACACACGCGAGGactcacactggggagaaaCCGCacaaatgtgatcaatgcggcaGAACATTTTTTAGGCATTCACATCTGAAAAACCATCAGAGCGTtcatacaaaggagaagccttatTCGTGTGCTCTATGTGGAAA
>TCONS_00039983
ACAACAGACGCGTTCattcagcgtcgagtcttcagagctgagATTTTTTGTGTCCAGTTTTTTCCTCCTTCAGTTCAGCTGTAAATACTGGAATATCCCCATCAGTCTACAACTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagGTGTGATGGTaaaggaggagagtgaagacctGAGCGgagatgaggagaaacatcatgtcaagaGTGAGGAAGAAACTCAATCAGAGACTGAACATAGGATTTCAATTGAAAGAACAGCTGGTAAaggtttcacctgcactcagtgcgGAAAGAGTTTCAAGAACAAACACCTTCTCAAGCGTCATGtgatgatccacaccggagagaaaccttaccagtgttcacactgcgacaagagattcaatGATTCAGGAAACCTGAAAACACACGCGAGGactcacactggggagaaaccgTATCACTGCACTgcttgtgggaagagttttacacAATCGTCTTCTCTgcgaacacacacaaaacacaatcaCAACCTGATAACAAAggaggaggagagtgaagatttGAGTGAAGCCAAGAAGGTCAACTTCAGCGTTCGTATGAAGGAGGAACCCTATTCATGTTCTGtctgtggaaagagttttaaacaTCAGTCGAGTTTAAGTCAGCATCAgatgatccacaccggagagaaacctcaCGCGTGTattcagtgtgggaggagttttgGACAATTATCAAACCTTATTCAACACATGCTGATCCACTCCGGAGAGAAGCCGCacaaatgtgatcaatgcggcaGAACATTTTTTAGGCATTCACATCTGAAAAACCATCAGAGCGTtcatacaaaggagaagccttatTCGTGTGCTCTATGTGGAAAGACTTTTACGCGGCAGTCGAGTTTAAGTCTACAcgagaagatccacactggtgtgaaggAGCATGTGTGCTTTGAGTGTGGGAAGACTTTTTTTCAAGCCGGATATTTGAAGcgacaccagaggattcacactggagagaaaccttacgcgtgttcacactgcgacaggAGATTTGTTTGGTCAGAATGTCTGAAGATACACGAGAGGACTCACGCTGGATAGAAAACACATCAATGTGATCAATGCcgcaaaacattttaagatctgtATAAACATCTTCGGGTAGGGACACACCAAGTTGGTTTGGTGTTTTCCTCGTCACCTCTTAACATCAGTGCTTATTGGCCAgattcagcatgtagaattgGCTGAAGGGACCAATCTGATTAGTTATTCAGCAGTGAACCTGAGTGTGTCGTGTGTGTGAAGTGACATCACTAATAAACAATTCAAGTCAAGAACG

Function

symbol description
znf1162 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050220-5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

Ensembl:

ensembl_id ENSDARG00000071833

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039982 False 807 mRNA 0.44 4 2660505 2668318
TCONS_00039983 True 1432 mRNA 0.44 4 2660531 2668782

Neighbor

gene id symbol gene type direction distance location
XLOC_020027 CU570894.2 coding upstream 1011 2473222 ~ 2659494 (+)
XLOC_020039 znf1173 coding upstream 21268 2632961 ~ 2639237 (+)
XLOC_020038 CU896630.1 coding upstream 28767 2631618 ~ 2631738 (+)
XLOC_020026 si:ch73-92e7.4 coding upstream 31034 2459591 ~ 2629471 (+)
XLOC_020037 CU570894.1 coding upstream 38904 2598998 ~ 2621601 (+)
XLOC_020041 zgc:194221 coding downstream 12113 2680895 ~ 2682759 (+)
XLOC_020042 si:dkey-20i20.15 coding downstream 17101 2685883 ~ 2870110 (+)
XLOC_020043 znf1171 coding downstream 40685 2709467 ~ 2712891 (+)
XLOC_020044 znf1163 coding downstream 47033 2715815 ~ 2718913 (+)
XLOC_020045 si:dkey-20i20.11 coding downstream 83105 2751887 ~ 2758749 (+)
XLOC_020033 NA non-coding upstream 113627 2546086 ~ 2546878 (+)
XLOC_020013 NA non-coding upstream 421412 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 482042 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 497059 2160039 ~ 2163446 (+)
XLOC_020048 NA non-coding downstream 123793 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 145681 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 253369 2922151 ~ 2927616 (+)
XLOC_020058 NA non-coding downstream 441254 3110036 ~ 3110513 (+)
XLOC_020061 NA non-coding downstream 550221 3219003 ~ 3222417 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_01931671_01959671 NA misc CI01000040 null 1931390 ~ 1960245 (-)
mexican tetra (Astyanax mexicanus) G154844 NA non-coding NC_035913.1 CM008316.1 26994341 ~ 26996831 (+)