XLOC_020025 (znf1177)


Basic Information

Item Value
gene id XLOC_020025
gene name znf1177
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2451732 ~ 2452591 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039960
ATGAAGACTGAAGaactgagtgaagatgaggagaaacatcatgtcaaaactGAAGGAGAAACTCAGTCAGAGATTGATCACAGTTTTTTAGTGAATACAACAGCCGTAAAaggtttcacctgcactcagtgtggaaagagtttcaggcaTAACAGCGATCTCAATcgccacatgaggatccacagtggagagaaggcttacaagtgttcacactgcgacaagagattcaatGAGCCAGGATACCTGAaaatacacatgaggatccacactggagataaACCACACAAGTGTGATCAATGcggcaaaacatttttgaggcCTTCAGATCTGAAGCGACATCTTAGAGTTCATACAAACGAGAGGCCTTATCCATgctctgagtgtggaaagagttttacacaTCAGTATAGTTTAAAAggacatcagaagatccacactggtgtgaaagagtttGTGTGTGATAAGTGTGAGATGACTTTTATTAGAGTTATGATTCACTCTGGAGAGAAACCgcacaagtgttcacactgcgacaggAGATTTCGTAAGGTACAATCCCTGAAAAGTCACGAGATGatgcacactggagagaagccttaccagtgttcacactgcgacaagggATTTGCTTGGCTACAATCACTGAggacacatgagaggattcacactagagagaaaccgtgcgcatgtactcagtgtgggaagagttttattaGAGCTGGAgactcacactggagagaaaccgtaccagtgttcacactgcgacaagagattcagtctgTTACATTCCCTGAAACGACACAAGAGTACGCACTCTAG

Function

symbol description
znf1177 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000073821

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039960 True 819 mRNA 0.44 3 2451732 2452591

Neighbor

gene id symbol gene type direction distance location
XLOC_020024 zgc:171435 coding upstream 7204 2431585 ~ 2444528 (+)
XLOC_020023 zgc:113220 coding upstream 30692 2409175 ~ 2421040 (+)
XLOC_020022 zgc:112977 coding upstream 45844 2403068 ~ 2405888 (+)
XLOC_020021 zgc:171435 coding upstream 57580 2390544 ~ 2394152 (+)
XLOC_020020 si:dkey-4c15.12 coding upstream 89856 2357347 ~ 2361876 (+)
XLOC_020026 si:ch73-92e7.4 coding downstream 7000 2459591 ~ 2629471 (+)
XLOC_020027 CU570894.2 coding downstream 20631 2473222 ~ 2659494 (+)
XLOC_020028 CU856622.1 coding downstream 43338 2495929 ~ 2499296 (+)
XLOC_020029 znf1170 coding downstream 51933 2504524 ~ 2505296 (+)
XLOC_020030 zgc:173726 coding downstream 58237 2510828 ~ 2521856 (+)
XLOC_020000 NA non-coding upstream 161075 2007241 ~ 2290657 (+)
XLOC_020013 NA non-coding upstream 212639 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 273269 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 288286 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 571062 1878147 ~ 1880670 (+)
XLOC_020033 NA non-coding downstream 93495 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 179027 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 339984 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 361872 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 469560 2922151 ~ 2927616 (+)

Expression


Co-expression Network