XLOC_020030 (zgc:173726)


Basic Information

Item Value
gene id XLOC_020030
gene name zgc:173726
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2510828 ~ 2521856 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039966
aattcccCGTTGTTCCCGCCTCAACGTGATGACGTCAGAGCGACGCGTTCattcagcgtcgagtcttcagagctgagATCGTCCCGTCAGTCTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaggagactgaagaactaatagATGTGAAGCaggagagtgaagaactgagtgaagatgaggagaaacatcaggTCAAAAGTGAAGAAGAAACTCAATCAGAGACTGAACATTTATCTTTTCTACAATCAAACACGCATAACAATTACAATGTGATcgtgaaggaggagagtgaagaactgaatgaagatgaggagaaacatcaggTCAAAAGTGAAGAAGAAACTCAATCAGAGACTGAACATTTATCTTctctacaaacaaacacaaacaacactcaCAACCTGACGGTGAAGAAAGAGGAAAGTGAAGAACTGTGTGAAGATAAGAAAGTCTATCAAAGCGTTCAAACAGAAGTGAAGTCAAATACTTGCTCTTTGTGTGGAAAGACTTTTATAAAGCCATCGTATTTAAAACGACAccagaggactcacactggagagataCCGTACACATGCgatcaatgtgggaagagtttcaacaaaCCATCaacccttaatcaacacatgctGATCcatactggagagaaaacacacaaatgtgatcaCTGCGGCAAAACATTTCTAGAGCCTTCAGATCTAAACACCCATCTTACAGTTCACACAAAAGAAAAGCCTTATTCATgttctgagtgtggaaagagGTTTACACTGCtgccatatttaaaaaaacacgttaagatccacactggtgtgaaagagttcGTCTGctctgagtgtgggaagagttttaataCAGCCCGAAACTTGAAACAACAccagatgatccacactggagagagaccttacaagtgttcacactgcgacaagagcttCATTTACTTACAAAACCTGAAATCACAtcagaggactcacactggagagaaaccacacaagtgttcacactgcgacaagagatttgGTAATTTACATAACCTGAAACTACAccagatgatccacactggagagagaccgtacaagtgttcacactgcgataAGAGATTTAGGCAGTTACAGATTCTGAAAAACCATGAGAGGACTCACACTAAAGAGAAGCCGAACACATGTACTCAGcacacatgtactcagtgtggaaaTAGCTTCACAAAATCACTACACCTTCAATGGCACATGATGATCCACCCTGGAGAGAGgctgtacaagtgttcacactgcgataAGAGATTTAGGCAGTTACAGATTCTGAAAAACCATGAAAGGACTCACACTAAAGAGAAGCCGAACACATGTCCTCAGcacacatgtactcagtgtggaaaTAGCTTCACAAAATCACTACACCTTCAGTGGCACATGATGATCCAcgctggagagaaaacacaaatgtgatcaatgcggcaGAACGTTTTTGAGACCTTCAGAGCTGAAGAGATATCTTATAGTtcatacaaaggagaagccttatTCATGCTCTAAGTGTAAAAAAAGTTTTACGCAACAGGCAGAATTAAAATCACATCAACCAAACCACACTGGTGTGATAGAGCATGTCTGTTTTGAGTGTGGGAACACTTTTGATACAGCTTTAGGCTTGAAAAAGCACCagaagattcacactggagagagaccacacaaatgtgatcaatgtggcaaaacatttttgaagcCTTCAGATCTGAATCTTAGAGTTCATACATAGAAGAAGCCTTATTCATGTGCTGAGAGTGGAAAGAGTTTTACGCAACAGGCAAAATTAAAATCACATCAACAAAA
>TCONS_00039967
agcgtcgagtcttcagagctgaggtggGTCTCAtgctttttctcgtgtttactcagcaataaaacacacttttatttattttagtttattaaagcgacaatctgcgactagtttctgcactgagttcacctctatctgtgtgtctgctgctgaccaaaacaacatAGGCAGCGAGATCGTCCCGTCAGTCTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaggagactgaagaac
>TCONS_00039968
atAGGCAGCGAGGTGCTCTGAGAGGAACATATGCGCtaagtATCGTCCCGTCAGTCTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaggagactgaagaactaatagATGTGAAGCaggagagtgaagaactgagtgaagatgaggagaaacatcaggTCAAAAGTGAAGAAGAAACTCAATCAGAGACTGAACATTTATCTTTTCTACAATCAAACACGCATAACAATTACAATGTGATcgtgaaggaggagagtgaagaactgaatgaagatgaggagaaacatcaggTCAAAAGTGAAGAAGAAACTCAATCAGAGACTGAACATTTATCTTctctacaaacaaacacaaacaacactcaCAACCTGACGGTGAAGAAAGAGGAAAGTGAAGAACTGTGTGAAGATAAGAAAGTCTATCAAAGCGTTCAAACAGAAGTGAAGTCAAATACTTGCTCTTTGTGTGGAAAGACTTTTATAAAGCCATCGTATTTAAAACGACAccagaggactcacactggagagataCCGTACACATGCgatcaatgtgggaagagtttcaacaaaCCATCaacccttaatcaacacatgctGATCcatactggagagaaaacacacaaatgtgatcaCTGCGGCAAAACATTTCTAGAGCCTTCAGATCTAAACACCCATCTTACAGTTCACACAAAAGAAAAGCCTTATTCATgttctgagtgtggaaagagGTTTACACTGCtgccatatttaaaaaaacacgttaagatccacactggtgtgaaagagttcGTCTGctctgagtgtgggaagagttttaataCAGCCCGAAACTTGAAACAACAccagatgatccacactggagagagaccttacaagtgttcacactgcgacaagagcttCATTTACTTACAAAACCTGAAATCACAtcagaggactcacactggagagaaaccacacaagtgttcacactgcgacaagagatttgGTAATTTACATAACCTGAAACTACAccagatgatccacactggagagagaccgtacaagtgttcacactgcgataAGAGATTTAGGCAGTTACAGATTCTGAAAAACCATGAGAGGACTCACACTAAAGAGAAGCCGAACACATGTACTCAGcacacatgtactcagtgtggaaaTAGCTTCACAAAATCACTACACCTTCAATGGCACATGATGATCCACCCTGGAGAGAGgctgtacaagtgttcacactgcgataAGAGATTTAGGCAGTTACAGATTCTGAAAAACCATGAAAGGACTCACACTAAAGAGAAGCCGAACACATGTCCTCAGcacacatgtactcagtgtggaaaTAGCTTCACAAAATCACTACACCTTCAGTGGCACATGATGATCCAcgctggagagaaaacacaaatgtgatcaatgcggcaGAACGTTTTTGAGACCTTCAGAGCTGAAGAGATATCTTATAGTtcatacaaaggagaagccttatTCATGCTCTAAGTGTAAAAAAAGTTTTACGCAACAGGCAGAATTAAAATCACATCAACCAAACCACACTGGTGTGATAGAGCATGTCTGTTTTGAGTGTGGGAACACTTTTGATACAGCTTTAGGCTTGAAAAAGCACCagaagattcacactggagagagaccacacaaatgtgatcaatgtggcaaaacatttttgaagcCTTCAGATCTGAATCTTAGAGTTCATACATAGAAGAAGCCTTATTCATGTGCTGAGAGTGGAAAGAGTTTTACGCAACAGGCAAAATTAAAATCACATCAA
>TCONS_00039969
atgagtgatccagaaccctgcagaattaaacaggaggagactgaagaactaatagATGTGAAGCaggagagtgaagaactgagtgaagatgaggagaaacatcaggTCAAAAGTGAAGAAGAAACTCAATCAGAGACTGAACATTTATCTTTTCTACAATCAAACACGCATAACAATTACAATGTGATcgtgaaggaggagagtgaagaactgaatgaagatgaggagaaacatcaggTCAAAAGTGAAGAAGAAACTCAATCAGAGACTGAACATTTATCTTctctacaaacaaacacaaacaacactcaCAACCTGACGGTGAAGAAAGAGGAAAGTGAAGAACTGTGTGAAGATAAGAAAGTCTATCAAAGCGTTCAAACAGAAGTGAAGTCAAATACTTGCTCTTTGTGTGGAAAGACTTTTATAAAGCCATCGTATTTAAAACGACAccagaggactcacactggagagataCCGTACACATGCgatcaatgtgggaagagtttcaacaaaCCATCaacccttaatcaacacatgctGATCcatactggagagaaaacacacaaatgtgatcaCTGCGGCAAAACATTTCTAGAGCCTTCAGATCTAAACACCCATCTTACAGTTCACACAAAAGAAAAGCCTTATTCATgttctgagtgtggaaagagGTTTACACTGCtgccatatttaaaaaaacacgttaagatccacactggtgtgaaagagttcGTCTGctctgagtgtgggaagagttttaataCAGCCCGAAACTTGAAACAACAccagatgatccacactggagagagaccttacaagtgttcacactgcgacaagagcttCATTTACTTACAAAACCTGAAATCACAtcagaggactcacactggagagaaaccacacaagtgttcacactgcgacaagagatttgGTAATTTACATAACCTGAAACTACAccagatgatccacactggagagagaccgtacaagtgttcacactgcgataAGAGATTTAGGCAGTTACAGATTCTGAAAAACCATGAGAGGACTCACACTAAAGAGAAGCCGAACACATGTACTCAGcacacatgtactcagtgtggaaaTAGCTTCACAAAATCACTACACCTTCAATGGCACATGATGATCCACCCTGGAGAGAGgctgtacaagtgttcacactgcgataAGAGATTTAGGCAGTTACAGATTCTGAAAAACCATGAAAGGACTCACACTAAAGAGAAGCCGAACACATGTCCTCAGcacacatgtactcagtgtggaaaTAGCTTCACAAAATCACTACACCTTCAGTGGCACATGATGATCCAcgctggagagaaaacacaaatgtga

Function

symbol description
zgc:173726 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-108 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000077078

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039966 False 1914 mRNA 0.41 5 2510828 2521856
TCONS_00039967 False 318 mRNA 0.43 2 2510882 2512202
TCONS_00039968 False 1873 mRNA 0.41 5 2511045 2521851
TCONS_00039969 True 1359 mRNA 0.41 4 2512154 2521472

Neighbor

gene id symbol gene type direction distance location
XLOC_020029 znf1170 coding upstream 5532 2504524 ~ 2505296 (+)
XLOC_020028 CU856622.1 coding upstream 11532 2495929 ~ 2499296 (+)
XLOC_020025 znf1177 coding upstream 58237 2451732 ~ 2452591 (+)
XLOC_020024 zgc:171435 coding upstream 66300 2431585 ~ 2444528 (+)
XLOC_020023 zgc:113220 coding upstream 89788 2409175 ~ 2421040 (+)
XLOC_020031 znf1003 coding downstream 2759 2524615 ~ 2529983 (+)
XLOC_020032 si:ch73-92e7.4 coding downstream 11658 2533514 ~ 2538691 (+)
XLOC_020033 NA coding downstream 24230 2546086 ~ 2546878 (+)
XLOC_020034 zgc:175284 coding downstream 27188 2549044 ~ 2558579 (+)
XLOC_020035 CU896630.2 coding downstream 40245 2562101 ~ 2676627 (+)
XLOC_020000 NA non-coding upstream 220171 2007241 ~ 2290657 (+)
XLOC_020013 NA non-coding upstream 271735 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 332365 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 347382 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 630158 1878147 ~ 1880670 (+)
XLOC_020038 CU896630.1 non-coding downstream 109762 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 270719 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 292607 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 400295 2922151 ~ 2927616 (+)

Expression


Co-expression Network