XLOC_020032 (si:ch73-92e7.4)


Basic Information

Item Value
gene id XLOC_020032
gene name si:ch73-92e7.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2533514 ~ 2538691 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039971
ACTGAACTGACGCGTTTATTgagcgtcgagtcttcagagctgagTTCAGCTGTAAATACTGGAGTTTTTCCATCAGTCTACAAGTGAAGACGAGCATCAGACCATTAGGAAGAAGATGAGTGAttcagaaccctgcagaattaaacaggaagagaccGAAGAACTAATAGAtgtgaaggaggagagtgaagatgaggagaaacatcaggTCAAAAGTGGAGAAGGAACTCAATCAGAGCCTGAACAGTTACCTTCTCTGCAAACAAACACCAACCACAACCTGATGGTGAAAAAAGAGGAAAGTGAAGAACTGAGTGTAGACAAGAAGGTCCGTCGTAGTGTTCATACAGAAGTCAGGCCAAATTCATGCACTTTGTGTGGAAAGACTTACAAACGGCTGTCACATTTAAAACAACAccagaggactcacactggagagagaccgtacACATGTgatcaatgtgggaagagtttcagtctACCATCaacccttaatcaccacatgaagatccacactggagagaaaacacacaaatgtgatcactgcggcaaaacatttttgaggtCTACAGAGCTGAGGAGACATCTTACAGTTCATACAAACGAGAAGCCTTATTCATgctctgagtgtggaaagagtgtAAGTCGTCTGTCAATTTTAAAAGAACATCAGAAGATCCACGCTGGTGTTAAAGAGCATATTTGCtttgagtgtgggaagagttttattaATGCTCAAGTACTGCAAATACACCagagga

Function

symbol description
si:ch73-92e7.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110100

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039971 True 761 mRNA 0.42 4 2533514 2538691

Neighbor

gene id symbol gene type direction distance location
XLOC_020031 znf1003 coding upstream 3531 2524615 ~ 2529983 (+)
XLOC_020030 zgc:173726 coding upstream 11658 2510828 ~ 2521856 (+)
XLOC_020029 znf1170 coding upstream 28218 2504524 ~ 2505296 (+)
XLOC_020028 CU856622.1 coding upstream 34218 2495929 ~ 2499296 (+)
XLOC_020025 znf1177 coding upstream 80923 2451732 ~ 2452591 (+)
XLOC_020033 NA coding downstream 7395 2546086 ~ 2546878 (+)
XLOC_020034 zgc:175284 coding downstream 10353 2549044 ~ 2558579 (+)
XLOC_020035 CU896630.2 coding downstream 23410 2562101 ~ 2676627 (+)
XLOC_020036 si:ch73-92e7.6 coding downstream 36074 2574765 ~ 2580575 (+)
XLOC_020037 CU570894.1 coding downstream 60307 2598998 ~ 2621601 (+)
XLOC_020000 NA non-coding upstream 242857 2007241 ~ 2290657 (+)
XLOC_020013 NA non-coding upstream 294421 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 355051 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 370068 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 652844 1878147 ~ 1880670 (+)
XLOC_020038 CU896630.1 non-coding downstream 92927 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 253884 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 275772 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 383460 2922151 ~ 2927616 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1196024 LOC106601477 non-coding NC_048577.1 CM023231.2 64627422 ~ 64668426 (-)