XLOC_020029 (znf1170)


Basic Information

Item Value
gene id XLOC_020029
gene name znf1170
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2504524 ~ 2505296 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039965
TTCAGCTGTAAATACTGGAATATTCCCATCAGTCTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattAAAGGAGAAAATGAGTGATCCAGAGCTCTGCAGAATTAAagaggaagagactgaagaaataatagATGTGATtgtgaaggaggagagtgaagaactgagtgacgatgaggagaaacatcatgtcaaaagtGAAGAAGAAACTCAATCCGAGACTGAAGATAGCTTTTTAGCCGTAAATGGTTTCATCTGCTCtctgtgtggaaagagtttcaggcGTAAATGCGATCTCAATcgccacatgaggatccacactgcaGAGAGACCccacaagtgttcacactgcaacaaGGGATTCAATGATGCAGGATACCTGAAAACACACGagaggatccacaccggagagagacCGTACACATGCAgtctgtgtgggaagagtttcacacaATCATCAAGCCT

Function

symbol description
znf1170 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095397

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039965 True 493 mRNA 0.43 2 2504524 2505296

Neighbor

gene id symbol gene type direction distance location
XLOC_020028 CU856622.1 coding upstream 5228 2495929 ~ 2499296 (+)
XLOC_020025 znf1177 coding upstream 51933 2451732 ~ 2452591 (+)
XLOC_020024 zgc:171435 coding upstream 59996 2431585 ~ 2444528 (+)
XLOC_020023 zgc:113220 coding upstream 83484 2409175 ~ 2421040 (+)
XLOC_020022 zgc:112977 coding upstream 98636 2403068 ~ 2405888 (+)
XLOC_020030 zgc:173726 coding downstream 5532 2510828 ~ 2521856 (+)
XLOC_020031 znf1003 coding downstream 19319 2524615 ~ 2529983 (+)
XLOC_020032 si:ch73-92e7.4 coding downstream 28218 2533514 ~ 2538691 (+)
XLOC_020033 NA coding downstream 40790 2546086 ~ 2546878 (+)
XLOC_020034 zgc:175284 coding downstream 43748 2549044 ~ 2558579 (+)
XLOC_020000 NA non-coding upstream 213867 2007241 ~ 2290657 (+)
XLOC_020013 NA non-coding upstream 265431 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 326061 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 341078 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 623854 1878147 ~ 1880670 (+)
XLOC_020038 CU896630.1 non-coding downstream 126322 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 287279 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 309167 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 416855 2922151 ~ 2927616 (+)

Expression


Co-expression Network