XLOC_020021 (zgc:171435)


Basic Information

Item Value
gene id XLOC_020021
gene name zgc:171435
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2390544 ~ 2394152 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039953
CCTACGTTTCTCCCGCCTCGCCGTGATGACGTCAGCACCGACGCGTTCattcagcgtcgagtcttcagagctgaggtCAAATCTGTTTATTCTCTTGAAGCTCTGCCACAATCAATGACGCTCCACCTGCATTGAAGCTATAAATACTGGAATATTCCCATCAGACTATCAGGAAGAAGTGaaagtgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaataggtttCAAAGaactgagtgaagatgaggagaaacatgTTAAGAGTGAAGAAGAAACTCGGTCACAGACTGATTTCATCTGCACTGGTTTCATCTgcgctcagtgtggaaagagtttcaagtacacatacacactcaagattcacatgaggatccacaccggagagaaaccttaccagtgttcacactgcgacaagagattcagctATTCAGGACAACTGAAAACACACGAGAGGATTCACAACGGAGAGAGACCGCATCGCTGCACtgattgtgggaagagtttcacggATTCATCTTCCTTACAAAAACACC
>TCONS_00039954
CGTTTCTCCCGCCTCGCCGTGATGACGTCAGCACCGACGCGTTCattcagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcGAAGAAGTGaaagtgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagATGTGATTGTGAAGGAGGAGAGCAAAGaactgagtgaagatgaggagaaacatgTTAAGAGTGAAGAAGAAACTCGGTCACAGACTGATTTCATCTGCACTGGTTTCATCTgcgctcagtgtggaaagagtttcaagtacacatacacactcaagattcacatgaggatccacaccggagagaaaccttaccagtgttcacactgcgacaagagattcagctATTCAGGACAACTGAAAACACACGAGAGGATTCACAACGGAGAGAGACCGCA

Function

symbol description
zgc:171435 Predicted to enable metal ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080305-7 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000093672

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039953 False 569 mRNA 0.45 3 2390544 2394152
TCONS_00039954 True 453 mRNA 0.47 3 2390548 2394096

Neighbor

gene id symbol gene type direction distance location
XLOC_020009 znf1165 coding upstream 981 2189356 ~ 2389563 (+)
XLOC_020020 si:dkey-4c15.12 coding upstream 28668 2357347 ~ 2361876 (+)
XLOC_020019 zgc:174224 coding upstream 38392 2345752 ~ 2352152 (+)
XLOC_020018 znf1175 coding upstream 68761 2315996 ~ 2321783 (+)
XLOC_020017 znf1180 coding upstream 89014 2298419 ~ 2301530 (+)
XLOC_020022 zgc:112977 coding downstream 8916 2403068 ~ 2405888 (+)
XLOC_020023 zgc:113220 coding downstream 15023 2409175 ~ 2421040 (+)
XLOC_020024 zgc:171435 coding downstream 37433 2431585 ~ 2444528 (+)
XLOC_020025 znf1177 coding downstream 57580 2451732 ~ 2452591 (+)
XLOC_020026 si:ch73-92e7.4 coding downstream 65439 2459591 ~ 2629471 (+)
XLOC_020000 NA non-coding upstream 99887 2007241 ~ 2290657 (+)
XLOC_020013 NA non-coding upstream 151451 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 212081 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 227098 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 509874 1878147 ~ 1880670 (+)
XLOC_020033 NA non-coding downstream 151934 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 237466 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 398423 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 420311 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 527999 2922151 ~ 2927616 (+)

Expression


Co-expression Network