XLOC_020014 (znf1144)


Basic Information

Item Value
gene id XLOC_020014
gene name znf1144
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2239254 ~ 2242861 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039927
CCGTTGTTCCCGCCTCGCCGTGATGACGTCAGCGCTGACGCGTTCATTCAGCGTCGAGTCTTTtgagctgagctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagaagtgatggtgaaggaggagagtgaagaaccgagtgaagatgaggagaaacatcatgtcaagaGTGAAGAAGAAACTCACGCAGAGGACGAACACAATTTTCTAAAGAAAAGGAAaggtttcacctgcactcagtgtggaaagagttttaaccAGAAATACGACCTCAACGttcacatgagaatccacactggagagaaaccttacaagtgttcccactgcgacaagagattccaTTGTTCAGCCCACCTGAAGAGGCATgagaagacccacactggagagaaaccacacAAGTGTGATCAGTGCGACAAACTCTTTTCAAGGTCTTCAACTTTGAAGAGACATCTTAGAGTtcatacaaaggagaagccttatTCGTGcgctgagtgtggaaag
>TCONS_00039928
CCGTGATGACGTCAGCGCTGACGCGTTCATTCAGCGTCGAGTCTTTtgagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagaGAGGAGCTCTGAGAGGACAATATGAGCTCAGTAACTTATTTGTatttctctgtttattctcctgaagctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagaagtgatggtgaaggaggagagtgaagaaccgagtgaagatgaggagaaacatcatgtcaagaGTGAAGAAGAAACTCACGCAGAGGACGAACACAATTTTCTAAAGAAAAGGAAaggtttcacctgcactcagtgtggaaagagttttaaccAGAAATACGACCTCAACGttcacatgagaatccacactggagagaaaccttacaagtgttcccactgcgacaagagattccaTTGTTCAGCCCACCTGAAGAGGCATgagaagacccacactggagagaaaccacacAAGTGTGATCAGTGCGACAAA
>TCONS_00039929
TGATGACGTCAGCGCTGACGCGTTCATTCAGCGTCGAGTCTTTtgagctgagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgtgttcattcattactCTTCTATGATAAGGCTGAACGACAGTGAGATTaagtgatggtgaaggaggagagtgaagaaccgagtgaagatgaggagaaacatcatgtcaagaGTGAAGAAGAAACTCACGCAGAGGACGAACACAATTTTCTAAAGAAAAGGAAaggtttcacctgcactcagtgtggaaagagttttaaccAGAAATACGACCTCAACGttcacatgagaatccacactggagagaaaccttacaagtgttcccactgcgacaagagattccaTTGTTCAGCCCACCTGAAGAGGCATgagaagacccacactggagagaaaccacacAAGTGTGATCAGTGCGACAAAC
>TCONS_00039930
ctgaagctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagaagtgatggtgaaggaggagagtgaagaaccgagtgaagatgaggagaaacatcatgtcaagaGTGAAGAAGAAACTCACGCAGAGGACGAACACAATTTTCTAAAGAAAAGGAAaggtttcacctgcactcagtgtggaaagagttttaaccAGAAATACGACCTCAACGttcacatgagaatccacactggagagaaaccttacaagtgttcacactgcgacaagagattcagccAGTTAAGACTCATGACAACACAtgagatgatccacactggagagagaacacacaagtgtgatcagtgcggcaaaacatttttgagggcTTCAGAGCTGAAGGAGCATCTTAGAGTTTACACAAACGAGAGGCCTTATCCGTGctctgagtgtgggaagagttttaaacGTTTACGAGAGTTAAATGCACATGAGCAGATCCACACTGGTCTGAAGGAGTTTGTGTGCCTTGAGTGCGAGAAGAGTTTCATTACAGCTAGCGGCTTGAAACGACAccagaggatccacactggagagaaacccttcaagtgttcacactgcgacaagacatTCAGTCAATCAGGAAATCTGAGAGTACATGAGAgtgttcacactggagagaaaccgtacacgtgTACTca

Function

symbol description
znf1144 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-78 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000094563

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039927 False 577 mRNA 0.46 3 2239254 2241860
TCONS_00039928 False 686 mRNA 0.44 3 2239271 2241776
TCONS_00039929 False 511 processed_transcript 0.44 3 2239274 2241777
TCONS_00039930 True 753 mRNA 0.45 3 2239974 2242861

Neighbor

gene id symbol gene type direction distance location
XLOC_020013 NA coding upstream 161 2237152 ~ 2239093 (+)
XLOC_020012 znf1161 coding upstream 3994 2228919 ~ 2235260 (+)
XLOC_020011 znf1172 coding upstream 15161 2217935 ~ 2224093 (+)
XLOC_020010 si:dkeyp-79b7.12 coding upstream 28676 2207502 ~ 2210578 (+)
XLOC_020008 znf1152 coding upstream 52166 2183110 ~ 2187088 (+)
XLOC_020015 si:dkey-4c15.8 coding downstream 4784 2247645 ~ 2251297 (+)
XLOC_020016 si:dkey-4c15.9 coding downstream 17636 2260497 ~ 2266583 (+)
XLOC_020017 znf1180 coding downstream 55558 2298419 ~ 2301530 (+)
XLOC_020018 znf1175 coding downstream 73135 2315996 ~ 2321783 (+)
XLOC_020019 zgc:174224 coding downstream 102891 2345752 ~ 2352152 (+)
XLOC_020007 BX640537.1 non-coding upstream 60791 2175857 ~ 2178463 (+)
XLOC_020006 BX640537.2 non-coding upstream 75808 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 358584 1878147 ~ 1880670 (+)
XLOC_019977 BX649416.3 non-coding upstream 507144 1725568 ~ 1732110 (+)
XLOC_020033 NA non-coding downstream 303225 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 388757 2631618 ~ 2631738 (+)
XLOC_020048 NA non-coding downstream 549714 2792575 ~ 2795451 (+)
XLOC_020050 NA non-coding downstream 571602 2814463 ~ 2827856 (+)
XLOC_020054 NA non-coding downstream 679290 2922151 ~ 2927616 (+)

Expression


Co-expression Network