RNA id: TCONS_00039928


Basic Information

Item Value
RNA id TCONS_00039928
length 686
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_020014
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2239254 ~ 2242861 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGTGATGACGTCAGCGCTGACGCGTTCATTCAGCGTCGAGTCTTTtgagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagaGAGGAGCTCTGAGAGGACAATATGAGCTCAGTAACTTATTTGTatttctctgtttattctcctgaagctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagaagtgatggtgaaggaggagagtgaagaaccgagtgaagatgaggagaaacatcatgtcaagaGTGAAGAAGAAACTCACGCAGAGGACGAACACAATTTTCTAAAGAAAAGGAAaggtttcacctgcactcagtgtggaaagagttttaaccAGAAATACGACCTCAACGttcacatgagaatccacactggagagaaaccttacaagtgttcccactgcgacaagagattccaTTGTTCAGCCCACCTGAAGAGGCATgagaagacccacactggagagaaaccacacAAGTGTGATCAGTGCGACAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-78 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000135320

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042013 lncRNA upstream 178 2237152 ~ 2239093 (+) False XLOC_020013
TCONS_00041854 lncRNA upstream 178 2237620 ~ 2239093 (+) True XLOC_020013
TCONS_00041849 lncRNA upstream 32055 2007241 ~ 2207216 (+) False XLOC_020000
TCONS_00041855 lncRNA downstream 13235 2255011 ~ 2389563 (+) False XLOC_020009
TCONS_00041856 lncRNA downstream 13940 2255716 ~ 2340398 (+) False XLOC_020009
TCONS_00042015 lncRNA downstream 29441 2271217 ~ 2275880 (+) False XLOC_020000
TCONS_00042014 lncRNA downstream 29441 2271217 ~ 2275880 (+) False XLOC_020000
TCONS_00041857 lncRNA downstream 65409 2307185 ~ 2343652 (+) False XLOC_020009
TCONS_00039926 mRNA upstream 4011 2229964 ~ 2235260 (+) True XLOC_020012
TCONS_00039925 mRNA upstream 4079 2228919 ~ 2235192 (+) False XLOC_020012
TCONS_00039924 mRNA upstream 15178 2218030 ~ 2224093 (+) True XLOC_020011
TCONS_00039923 mRNA upstream 15623 2217939 ~ 2223648 (+) False XLOC_020011
TCONS_00039918 mRNA upstream 29029 2207502 ~ 2210242 (+) False XLOC_020010
TCONS_00039931 mRNA downstream 5869 2247645 ~ 2251297 (+) False XLOC_020015
TCONS_00039932 mRNA downstream 5890 2247666 ~ 2251185 (+) True XLOC_020015
TCONS_00039933 mRNA downstream 13196 2254972 ~ 2257515 (+) False XLOC_020009
TCONS_00039934 mRNA downstream 18721 2260497 ~ 2266583 (+) True XLOC_020016
TCONS_00039936 mRNA downstream 41592 2283368 ~ 2289706 (+) True XLOC_020000
TCONS_00039922 other upstream 15208 2217935 ~ 2224063 (+) False XLOC_020011
TCONS_00039920 other upstream 28693 2207506 ~ 2210578 (+) False XLOC_020010
TCONS_00039919 other upstream 28721 2207506 ~ 2210550 (+) False XLOC_020010
TCONS_00039921 other upstream 29009 2208035 ~ 2210262 (+) True XLOC_020010
TCONS_00039909 other upstream 52271 2183810 ~ 2187000 (+) True XLOC_020008
TCONS_00039935 other downstream 27619 2269395 ~ 2274734 (+) False XLOC_020000
TCONS_00039942 other downstream 86523 2328299 ~ 2336029 (+) False XLOC_020009
TCONS_00039951 other downstream 142551 2384327 ~ 2385967 (+) False XLOC_020009
TCONS_00039952 other downstream 143608 2385384 ~ 2389251 (+) True XLOC_020009
TCONS_00039978 other downstream 389842 2631618 ~ 2631738 (+) True XLOC_020038

Expression Profile

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