RNA id: TCONS_00041849


Basic Information

Item Value
RNA id TCONS_00041849
length 5310
lncRNA type read_through
GC content 0.42
exon number 2
gene id XLOC_020000
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2007241 ~ 2290657 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCCCAAAAAATtgtatgcatatttaacatagattttttttacttgctttgactattagagagtaaaaacaaaaaaaaaattctccattttggacagttaaaagtAGTGTTTGGGActtttcatatgctgcaaaacagttataagatgacactgtatgtctgtaacaaaatataaacattcaaagtattttaaacagcCACTTAAGAGCTGAAATGGGCTGTGGACActcaagccctaggaggttaaggaAATTACATAATCTACTCTAATCTTCATACTCTGTTTATTCTCCTGAAGCTCTGCCGCCATCAGTTAAAGACAAAGACAgggtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaaataatagatgtggtggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGGGAAGAAGAAACTCAATCAGAAACTGACGATagttgtttaatggaaagaacaGCTGTGAAAtttttcacctgcactcagtgtggaaagagtttcagctacGAATACGGTCTCAAGCGTCACatgctgatccacactggagagaaaccttacaagtgttcataTTGCGAGAAGAGCTTCAATTGTTCAGGAAACCAGAATAAACAtgagaggatccacactggagagaaaacacacagatGTGATCAGTGCAGGAAAACGTTTTTTAATTCTTCGGCTCTGAAGAACCATCTTGGAGTTCATATAAAAGAGAAGCCTTATACCTGtgctgagtgtggaaagagttttacactACAGTCATATTTAAGAAAACATGTTAAggtccacactggtgtgaaagagtttGTCTGCTTTGAGTGTAAGAAGAGTTTTATAAGATCTCAACAACTGAAACTTCAcctgatgattcacactggagagaaaccgtacaagtgttcacactgcgacaagagattcagaaAGTTAGAAACAGTGACAACGcacgagaggattcacactggagagagaccgtacacatgtactcagtgtgggaagagtttcaggcaATCTTCATCCCTTAATAATCAcaagaggatccacactggagagaaaacacacaagtgTGATCAGTGCGGGAAAATATTTTCGCGGCCTGCAGATCTGAAGATCCATCTCAGACTTCATACAAACGAGAAGCTTTATTCATgttctgagtgtggaaagagtttcacaaCACAATCCCATTTTAAAgcacatcagaagatccacactggtgtgagagagtttgCGTGCTCTGCATgcaataagatttttttaacatccGGAGACTTGAAAAAGCaccagaagatccacactggagagaaaccgcatgtgtgttcacactgcaacaaGAGATTTACTACTTTAGGACATCTGAAAgtacatgagaggattcacacaggagagaaaccgtacacgtgtactcagtgtgggaagagtttcacacaATTATCACACCATATAGATCACatgctgatccacactggagagaaaacacacaagtgTGATCAGTGCGGGAAAACATTTTCGAGGTCTTCAGATCTGAAGAGACATCTTCGACTTCATTCAAAGGAGAAGCCTTATTCATGTTctgtgtgtggaaagagttttgctCGGCAATCCCATTTGAAAGTGCATCAGAAGATCCACGCTAGAGATGAACCGTACACACACTCAGTGTTGGAAGAGTTTTGCACGATCATCATCCCTTGATAAACACATGATCGGTGCGGCAggacatttttttaagttttacacTCTTAAGAAGCTTCTTGATCTTCATACTGAGGAGAAGCTTTAGTTCTGCATTTAGATCTGAGTGCTGCGTTCATTACTATATGTCACAGTATATTATTGGACAGACTTCACTAGTGGATCTGTCGATCTGGAAAGGTGAAACTGGTTTACATCGTATCTTTCCAAATGCTCAGTTTGTCTTTTTGTGTGCCATTGCGTCAGGGTGTCCCACAGGGATCAGTTCTGGGTccttttatttagtatttatatgCTCTCTTatggggtggctcagtggttagcactgtcacctcactgcaagaaggtcacttgttaaAGCCTCAGCTaagccagttggcgtttctgtgtggagtttgcatgttctcctcgtgttggcgtgagtgtaatgctgtgttcacaccagataaatcgcgctattcgagcgtaaatagccgcatgaacatttgaggttactcgctttattcgcccgtcaaatccgcttcattcgcgtgtcaaattcacttcagaacagacgcggattcgcgtgatgggcagggcttctatctaccccgtgactctagcttcatagctaaatggctaacatggattttatgaagaaaataacagtgtttatgtgctttatgaaggatggtaaacagcgtcgatacgtttagagcTGTgtttgagtccactacatcctttcagaggtgcatccagctctttaagctcatagactcctccagaaactgaacctggctgatggaggctttcagcggtgcttctgactgagccaagcccagtttgatgaacttcttgtcggtgtctgctgggggatttcccctgggacaccgacaacaagcgatacgtcacaatcacgcccccacaagagcaagctcctgattggttaatgtggcgcgaatgtccgctgaagttcagattttcgaacgcgAGTGATTCGTGTGGAACGCGCATTAAGCGCATCAAAAGCTCAATTCGCGCCATGCGCACCGCGCAATTTTCGtcattcgcgccgcaggatgtctattcgcgcgtttgcattgacttaacatgtaaatcactcgcgcttgacgcgcgtgccgcgtctggtgtgaacgcagcataagaatgtcaaagtgtatgggtgtttcccagtgctgggttgcagctggaagggcatccgctgcataaaacatatgccagagtactTGCCGGTTCATTCACTCCAGATTACATGTGTGATCTGCTGCACTGAAGTGTAAAAGCCATGAGAGGTGGAGCTTTTTCTTATGGTGTTTAAGTTATGGAAAgcattaagcctgatttatacttctgcgtcaggtgaccggcgtaacccacggcgcaggcaacgcgcgcagctgtgcatttatacttctgtgcactgtctctgttggtctgcattaacacttccgaaacgctagttggcagtgaggtgtaaatgttcctctgtgtcgagtttcttcgcttctgttttgcatTTCCTGCACACTTTcggaatgtacaagtggctcaaactcgctcattttgaggcaggaaccggcggacgtgcaacaactttaactatgaggtaaacacaaaacaaaactttccatccggagctccttcaggggactccacacttgtaaacaatcgcttgcgcggcgtcgcgccattcgcgcgcctctcagtcccgcccagactcgtcagcgctaccaagccgaccaatcacagagcttacgctacgcgtcgttgcgacgtgtagttacattttttgagaggtgcacgtcagcgacggcgatggccacagcgaagggctatgcgtcagcgccgtagcatacgccggtgtttgacgcagaagtataaatcaagctTTACCCACAATTATCAGCAATGCAGTTTCTTTTGATTGCTTTAAGAAGCTTCTTAAGACGCATCTTAATATGTATCTtttgctttttattgttttattgattattGTGCCTGACTGTTGGCTTGATACTGTGATTTTATGTAAGCTTGTAATTCTTGGGttgagtttgtgtttgttgttgtaGGATTATTCCTTGGTTTAACTCTATAAAGGCAAAACAGAAATCTCTCCTAATCATCAACAGATGATTTAATTATGATGTATAGTCCATGACAGTAGCATATTACCAGTATCAcattttgagtaaaatattagtGACTATAGAAATGTAGTGACTAACcagtaatatttaatgtttgGTCTGTGTATTGGTCCCGCCTCTTCTCCACTGATTGGACAGATGGGTAAAAGATGACGGTTTACAAGCACCATCTTAAGTTCTAATCAGATTTTAGCAACATTGACATAAAATTTCACCTCATACTTGGGTCATTTAGGCCCAATTGTACCTTTACCTGTCCCAATTCTCTtaagcttgaaggtgtaggggtGAGGGCTGTAGAGCTCTTCAAACAGAGAATTTTCAAGACCATATTGCAAATGAAGAGGTATGAGAGCCTTCTCTACACCAGGTAAAGCAACAACATGCCTCCAAAACTGACCAAGGAGACCCACTAATGTAAAGAAGGAGCAATGATGTTCAGTAAAGATGGATgatttttgtttgcattaaaacaaaaaaaaacagatcatgCATATTTAGGATTGTTTTAGAGGTGAAAAGTCACATAAACAAAGCCAAACAAATATGCTTGGTCAGAACGTTTACTACTAAATGATGTGAACATCCTTACGATCACTCATTTTGAtgcaacaatacaaaataaattgagTAACTCAAGTTTTCTCAGAAGTCCATTATGCATGGGGAGTGTTTAATGGGCCATGAGTATTTAGTAGATTCAGACCAGGGCAGGCAAGGAACTTCCCCAATCAATgctaatgttcacccatcaaGAGGAAATGCTGTGaactgctgtcgccactggcttgcatggttcgtgACCTGTGGAgctgcgtatcgatggatttgctcttcagtgtttgaactctcagcagttaatattaaatcacactaaactgaacttcaactctaaaaactggacttacaccgtttcagtttactataactgtctatgtaaagctgctgtgactcaatcttcattgtaaaagcgctattgaaataaagatgaatgGAGTTGAGTTGTGAACCAGCCTCTGTAAATGCAGAtcatattgtaaatataaataatcttTCACAGGGTGCATGTACATGTCGAGAATAAGAGGTTTTTCCAATCATATGAAAGATTATCATCAACGCTCACTCAATTTCCATATAAACTGATTGAAAATGCTGCATCCACAGAGCTCACAAACTGCGCTCTTCCTTTTGTTGttttcattagattttttttattaaattgtttttatattgttttaaagcgGTTATTTCTTAAATGTTTccttattttattaactttatttttgttcAGGTTGctgatggtttcactttcacattaCAAGACGTATGGAATTGTCAAAGCAGGCTCAGTTTTCCCCgatttgatttaaaatatattgttttagccaAAAACTTAA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0010467 gene expression biological_process
GO:0008380 RNA splicing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039863 lncRNA upstream 46921 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA upstream 46921 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039867 lncRNA upstream 46921 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00039868 lncRNA upstream 47083 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039862 lncRNA upstream 52453 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00042013 lncRNA downstream 29936 2237152 ~ 2239093 (+) False XLOC_020013
TCONS_00041854 lncRNA downstream 30404 2237620 ~ 2239093 (+) True XLOC_020013
TCONS_00041855 lncRNA downstream 47795 2255011 ~ 2389563 (+) False XLOC_020009
TCONS_00041856 lncRNA downstream 48500 2255716 ~ 2340398 (+) False XLOC_020009
TCONS_00042015 lncRNA downstream 64001 2271217 ~ 2275880 (+) False XLOC_020000
TCONS_00039860 mRNA upstream 46469 1953096 ~ 1960772 (+) False XLOC_019999
TCONS_00039859 mRNA upstream 58214 1947494 ~ 1949027 (+) True XLOC_019998
TCONS_00039857 mRNA upstream 61789 1940595 ~ 1945452 (+) True XLOC_019997
TCONS_00039855 mRNA upstream 71397 1930589 ~ 1935844 (+) False XLOC_019996
TCONS_00039854 mRNA upstream 81895 1922293 ~ 1925346 (+) True XLOC_019995
TCONS_00039918 mRNA downstream 286 2207502 ~ 2210242 (+) False XLOC_020010
TCONS_00039923 mRNA downstream 10723 2217939 ~ 2223648 (+) False XLOC_020011
TCONS_00039924 mRNA downstream 10814 2218030 ~ 2224093 (+) True XLOC_020011
TCONS_00039925 mRNA downstream 21703 2228919 ~ 2235192 (+) False XLOC_020012
TCONS_00039926 mRNA downstream 22748 2229964 ~ 2235260 (+) True XLOC_020012
TCONS_00039866 other upstream 46921 1955496 ~ 1960320 (+) False XLOC_019999
TCONS_00039865 other upstream 47083 1954344 ~ 1960158 (+) False XLOC_019999
TCONS_00039861 other upstream 53305 1953138 ~ 1953936 (+) False XLOC_019999
TCONS_00039858 other upstream 58292 1946676 ~ 1948949 (+) False XLOC_019998
TCONS_00039856 other upstream 72191 1930601 ~ 1935050 (+) True XLOC_019996
TCONS_00039919 other downstream 290 2207506 ~ 2210550 (+) False XLOC_020010
TCONS_00039920 other downstream 290 2207506 ~ 2210578 (+) False XLOC_020010
TCONS_00039921 other downstream 819 2208035 ~ 2210262 (+) True XLOC_020010
TCONS_00039922 other downstream 10719 2217935 ~ 2224063 (+) False XLOC_020011
TCONS_00039929 other downstream 32058 2239274 ~ 2241777 (+) False XLOC_020014

Expression Profile

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