RNA id: TCONS_00039861


Basic Information

Item Value
RNA id TCONS_00039861
length 135
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_019999
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1953096 ~ 1960772 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcagcgtcgagtcttcagagctgagctctgccaccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatag

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-40 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000161196

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042012 lncRNA upstream 43714 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00041848 lncRNA upstream 221028 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00041847 lncRNA upstream 287667 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00039787 lncRNA upstream 569069 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042011 lncRNA upstream 623988 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039864 lncRNA downstream 376 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039868 lncRNA downstream 1576 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039867 lncRNA downstream 1576 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00041849 lncRNA downstream 53305 2007241 ~ 2207216 (+) False XLOC_020000
TCONS_00041850 lncRNA downstream 94630 2048566 ~ 2207216 (+) False XLOC_020000
TCONS_00039859 mRNA upstream 4111 1947494 ~ 1949027 (+) True XLOC_019998
TCONS_00039857 mRNA upstream 7686 1940595 ~ 1945452 (+) True XLOC_019997
TCONS_00039855 mRNA upstream 17294 1930589 ~ 1935844 (+) False XLOC_019996
TCONS_00039854 mRNA upstream 27792 1922293 ~ 1925346 (+) True XLOC_019995
TCONS_00039852 mRNA upstream 33539 1911269 ~ 1919599 (+) False XLOC_019994
TCONS_00039869 mRNA downstream 78087 2032023 ~ 2034151 (+) True XLOC_020001
TCONS_00039870 mRNA downstream 86518 2040454 ~ 2107440 (+) False XLOC_020000
TCONS_00039871 mRNA downstream 94630 2048566 ~ 2107440 (+) False XLOC_020000
TCONS_00039872 mRNA downstream 104458 2058394 ~ 2107440 (+) False XLOC_020000
TCONS_00039873 mRNA downstream 146838 2100774 ~ 2107607 (+) False XLOC_020000
TCONS_00039858 other upstream 4189 1946676 ~ 1948949 (+) False XLOC_019998
TCONS_00039856 other upstream 18088 1930601 ~ 1935050 (+) True XLOC_019996
TCONS_00039847 other upstream 72468 1878149 ~ 1880670 (+) True XLOC_019991
TCONS_00039846 other upstream 73158 1878147 ~ 1879980 (+) False XLOC_019991
TCONS_00039830 other upstream 225648 1725568 ~ 1727490 (+) False XLOC_019977
TCONS_00039865 other downstream 408 1954344 ~ 1960158 (+) False XLOC_019999
TCONS_00039866 other downstream 1560 1955496 ~ 1960320 (+) False XLOC_019999
TCONS_00039875 other downstream 157264 2111200 ~ 2118003 (+) False XLOC_020002
TCONS_00039879 other downstream 166898 2120834 ~ 2124567 (+) False XLOC_020003
TCONS_00039883 other downstream 175552 2129488 ~ 2130380 (+) False XLOC_020004

Expression Profile

//