RNA id: TCONS_00042011


Basic Information

Item Value
RNA id TCONS_00042011
length 4159
lncRNA type read_through
GC content 0.40
exon number 3
gene id XLOC_019943
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1313046 ~ 1376970 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTTTATTGAAcgacagtgagaagatgagtgatccagaaccctccGCAATTAAAGAGGAAGAGACTGAAAAACCAACAGaCCTGACGATGAAGAATGACCAGACACTTCATGTCAGTAAAAGTGTGACCTGCGACGTGTGTGGAAAGAATTTCAAATGCAAACGGAGTCTCGAGTTTCACTCGACGATTCACAcgggagagaaaccgtacacgtgTACcgtgtgtgggaagagtttcagacagtcggcataccttaatcaacacatgatgatccacaccggagagaagccacACAAATGTGATCAGTGCAGCAAAATGTTTATAAAGGCATCAGAGCTGAAGGACCATCGTAGAGTTCATACAAACGAGAAGCCTTACTCGTGCTCCGTGTGCGGGAAGTGTTTTACACATCTGCAGATTTTAAAAAGACATGAGGTGattcacactggtgtgaaagagtttATGTGCTTTGCATGTGATAAGGCCTTTCTTACAGCTGGACACTTGAAACGGCACCTGATGATCCACACTGGCGAGAagccttacaagtgttcacactgtgaaaTGAGATTCACCCGGACAGAATCCATGAAagcacatgagaggattcacaccggagagaaaccgtacaagtgttcacactgcgacatgGGGTTCAGTCGGTCGGAATCTCTGAAAATGCATGaaagaattcacactggagagaaacctttcaaGTGTTCGTTCTGCATCATGACATTCAGCAGGTCAGAATCCCTGAAAACACATGAacggattcacactggagagaagccttatGGGTGCTCGTATTGCGATAGCAGATTCAATCTGGCTAAAGATCTGAAAATACAcgagaggatccacactggagagaaaccttaccagTGTTCGTACTGCGAAAAGAGATTCAGTCAGCTGCAAAACCTGAAAACGCATGAGATgagtcacactggagagaaaccgttcaagTGTGCGTTCTGTGAAAAGCAATTCACCAGGTCCGAATCCCTGAAagcacacatgagaattcacatcGGAGATAAGCCTTACAGTTGTTCATACTGCGAAAGCACTTTCAGTCTGTCAAGAGATCTGAAAATACACGAGAggactcacaccggagagaaaccgttcacatgtgaTCATTGTCTGAAGAGTTTCTCGCAATTATCAAACCTTAAACAACACATGATAGTCCACACTAGAGAGAACGCACACAAGTGTGATCAGTGTGACGAAGCATATTCGTGTGCTTCGAAGCTGAAGGCCCATCTTAGAGTTCACACAAGGGAGAAGCCGCATTCATGTTCTGAGTGTGGACAGAGTTTTACGCTGATGTACGATTTAACCGAACATCAGAAATCACACACTGCTGAGGTTTCATTAGAGCAGGACATCGAAGCAGATGATCACTGCTGACATCAAATTCGTTGAGTGTGATCTGATGGTGGAGAATTGAGAATGGAACCAACATAGGGAAAACTGGAAAACAAACTGAACTTATTTTTACAGAAAAAGAGCCTGGAGATATTTCACCTGCAGTcactgtggaaagagtttggcgaTCTTTAAGACTCACGTGGAGATCAGCACACAAATAACACCATTGTGTTTCATAACTCAACTTCTGTACTGGACTATTGGAGTACTCTATTGGTCTTTCAATCCAACACCATGATGCCCCTGCAGCTGATCCTGAATCAGCAGTGAGAGCGGTTGAAATGAACTGAAAAGAGTGCATGTCTTACGCCTCAATTTACGCTGGCTGCCAATCGCCGAATTCAAAACCCTTTAAACTTCCAAGGAGAGTTACAAAGGCTTATTACAAGTCTTTTGAAAATATCTATGCATATATTCTAATCTATGTCAGTGATgttacgatatatatatatatatagggttccTCAATTGATAAAAGGTTGTTGTTTAGTAGTCCAACTATTGATACTAGCTAGcatattttatcttatttgtagTGTGGCAGAATGAAACTGCAGGTCGTCAACGCTTCACCTTCACTTTGTGTCCGTCAGCACCGCTTAAGTGGCATTGCTCACTGTAGAAATTGGGAGTTCATCAACTTCAAGTGCCACTGAAAGCGTCAgcaatcagattgctttatgcaacTACCCCAGCTCAGGCAGTAGccgattgcggactaatttcattggcgatcacgtcagccccaaccTCAGACACATCCTCTGTCAAGCGCTGATGCTTAAGCCCCATGTGAATCAGGCATTAGAGCAGGTATGATATGTAGTAGTggattattattgtatttattttttgctgcctTGTTGAAGATGCACCGATCGACCAGTCGATGACCAGAATCGGaccttttttactttattattattattattattattattattagcctttGCATGACTGTTAACCGGCCGGTCATCTGTTTGATTAGCTTTTTACAATCAATCACTCGGGTTAATTGAAGCTGTTCCAGGTTACGAATGATCATTTTGACGAGTTACTCGTTAATCAACGGCAAACGTTTTGACCGATTCAGATTGAAAATTCAAATGCAGTTTTGGTTTTTCCGTTCAATCTGTGTTTAATACATTAGCTACACGAGTAACTATTCTGCTAGACACTCAAAACTGCTTTCAGAGAAAGGAAAGTGCTTTACCAGAGCAAGATACAAGATCAAAGATATCAGAAATTATTCATCGtcgaaaaataatacaaaacaaagcATTCGAATattaatcaaaacatttcattAGCGTTTGCTTGTAATCTTTGGACTTTTGTGAAATAAGAAAGTGACTGTACAATTACAGATTTTGTTATTATAGCAGTTTGGGGAAATCTAATGTTTGTATGGATTTCGTATGAAGCAGAAACTGTTGAATGTGGCGTAATAATAACTCCGATGTTAAGTATTGAAAACACAAGCTCATCCAGCTAACCAACATGAACCTGTTAGATCTGTTTGAAGACCACTCTTATGACTCCACGTTAAGCTGTGGTATCGTTAAACcatgcctttgtttgtttgttttgaaagtgCGCCCTCTATCTTTTGCTCTtgctatttcttttatttttattgactaTAATTTAGTCAAAGTATGTTgtaatattgcaaaatattacTCGAACATTACTAAAAGTTGATAAGCAATAATGCCTTACTACAGCATTACAGCAAGCAGTCATTTGTTACCGACGTACATGTTTAGTTTTGCTTTTGGAGCGCATTACATTACAACTCTGTTCGTCAACACTTGATCCCTCCAACCCTCCTTATTCATCTCTTTATTTTCATCTTTGCTTCAAAATATTGTCAAACGAGCAGGTATAATTTGTGGTAGTAGCTCACGCAGTCTGCTCTGTGAAATAAGGAagtgactgtaaaattacagattttgttAGTAGAGTAGTTTGGGGAAATCGAATGTTATATGGATTTCGTATGAAGCAGAAACTGTCTAACGTGGCGTAATAATAACTCAGATGCTATTAAATATTGAAAACACAAGCTCCTCCAGCCAACCAACATAAACCTGTTAGCTCTGTTTGATTTCACATTAAGCTGTGGTATCGTTAAACCATgcctttgtttgttttgaaagtgCGCCCTCTATCTTTTGCTATTTcgttttttcatttgattacttTTTCGAAAGTGTGTTGTTATGCGTTACTGAGACTGTGCCAAGTCGAATATTGCTAAAAGTTGAGCAGTAATGCCTTACTACAGAATTACAGCAGTCAATTGTTGCCAACGTGCATGTTTAGTTTCACTTTTGGAGCGCATTACAACTACATTCGTCAACATTTTTCTTCCCTCCAACCCTCCTTATTTATCCATCCTTATTTTCATCTTTgcatttgcttgtttaaaaagaGGTGCACAGTACTAAACAAACCCAGATCTGTCTCTGCATCCACATACTGTTGCTGTTCTGCTGTTTTGAAGTGCTGTTATCCTCTTTGTGAGATGCTTTTGGACGACAGCATGTGCTGGATGAATAAAATGTAAGCTATATTTGCTTTTACTGTTTAATCTGATAGACTTGTTTGCTTATTATACTCCCATGGTAGAACTTTCAAGTATCTTATTGTATTCTCAATTatcatattgtattatttttctgtcttttatcAGTAAAGTTTTCTGAGGTTC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039777 lncRNA upstream 49641 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042009 lncRNA upstream 122113 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039764 lncRNA upstream 250617 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00039763 lncRNA upstream 258908 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00042008 lncRNA upstream 378634 923511 ~ 938827 (+) True XLOC_019927
TCONS_00039787 lncRNA downstream 48181 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00041847 lncRNA downstream 331037 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00041848 lncRNA downstream 397900 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00042012 lncRNA downstream 576852 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00039862 lncRNA downstream 624000 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039781 mRNA upstream 10318 1300587 ~ 1307143 (+) True XLOC_019942
TCONS_00039780 mRNA upstream 22562 1291651 ~ 1294899 (+) True XLOC_019941
TCONS_00039779 mRNA upstream 27322 1285182 ~ 1290139 (+) True XLOC_019940
TCONS_00039778 mRNA upstream 35115 1276680 ~ 1282346 (+) True XLOC_019939
TCONS_00039774 mRNA upstream 114056 1186866 ~ 1203405 (+) False XLOC_019937
TCONS_00039785 mRNA downstream 1327 1330477 ~ 1333565 (+) True XLOC_019945
TCONS_00039786 mRNA downstream 23042 1352192 ~ 1361148 (+) True XLOC_019946
TCONS_00039788 mRNA downstream 54954 1384104 ~ 1397981 (+) False XLOC_019948
TCONS_00039789 mRNA downstream 67294 1396444 ~ 1407856 (+) True XLOC_019948
TCONS_00039790 mRNA downstream 92062 1421212 ~ 1424483 (+) True XLOC_019949
TCONS_00039775 other upstream 55189 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other upstream 65801 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039761 other upstream 277712 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 298309 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039750 other upstream 509947 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039812 other downstream 247713 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 301536 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039821 other downstream 320978 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039822 other downstream 331265 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039823 other downstream 332116 1661266 ~ 1665471 (+) True XLOC_019971

Expression Profile

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